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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgccattaattattctttatttgacataattgacaagttatggatactaacttaaacttcctcttttgcagGGGCTTTAATGAAGCAGTCAATGGGTTTGCAGATGATGGCTGGTCCATGTTAGAGAGTGATGGCATTGATGATGTCACCCTTCTTGTGAATTCCTCACCT

Basic information

species Glycine max
transcript GLYMA06G09100.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G09100.2 (Glycine max), 3'ss of exon 1
lower sequence: AT4G32880.1 (Arabidopsis thaliana), 3'ss of exon 11
---------gtttgtgccattaattattctttatttgacataattgacaagttatggatactaacttaaacttcctcttttgcagGGGCTTTAATGAAGCAGTCAATGGGTTTGCAGATGATGGCTGGTCCATGTTAGAGAGTGATGGCATTGATGATGTCACCCTTCTTGTGAATTCCTCACCT
         | || |  || |    |  |  | ||  | | |  | ||   || |  |  ||||  |    ||  |   |  ||| || || || |||||||| ||||||||    ||||| || ||||||||  ||||||||||||| || ||||||||||| ||||||||||| ||||| || 
gtaattagagcttctcacacttcaaaaacacttttaaaaaaacattacgtcttctaaaacctaaaattgtttttgttaatgtcagAGGATTCAACGAAGCAGTGAATGGGTTCAGCGATGAAGGATGGTCCATCCTAGAGAGTGATGGTATCGATGATGTCACTCTTCTTGTGAACTCCTCTCCC

upper sequence: GLYMA06G09100.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0008g03250.t01 (Vitis vinifera), 3'ss of exon 10
----gtttgtgccattaattattct-ttatttgacataattgacaagttatggatact-----aacttaaacttcctcttttgcagGGGCTTTAATGAAGCAGTCAATGGGTTTGCAGATGATGGCTGGTCCATGTTAGAGAGTGATGGCATTGATGATGTCACCCTTCTTGTGAATTCCTCACCT
    ||||||  ||||| | |   | ||  | ||     || |    |  |||||| |     | || | |  |  | |  |||||||| ||||||||||| || ||||||||| | ||||| || ||||| ||| | || |||||||| ||||||||||| |||||||||||||| ||||| |||
gtgagtttgtttcattattgaaattgttcctagaagctgttaaattttcttggatatttggaaatctgacatattttatcatgcagGGGTTTTAATGAAGCTGTTAATGGGTTTACGGATGAAGGATGGTCTATGATGGAAAGTGATGGTATTGATGATGTTACCCTTCTTGTGAACTCCTCTCCT

upper sequence: GLYMA06G09100.2 (Glycine max), 3'ss of exon 1
lower sequence: PP1S188_95V6.1 (Physcomitrella patens), 3'ss of exon 10
-----------------------------------------------gtttgtgccattaattattctttatttgacataattgacaagttatggatactaacttaaacttcctcttttgcagGGGCTTTAATGAAGCAGTCAATGGGTTTGCAGATGATGGCTGGTCCATGTTAGAGAGTGATGGCATTGATGATGTCACCCTTCTTGTGAATTCCTCACCT
                                               | |   | |||| |   | || |  |   |     ||      ||   |||  |  ||   || ||  |  ||||||||||| ||||| || |||||||| |||| |||||||||||||   |    ||  |  |||||  | ||||| || |   |  | || ||| |  | || 
gtgagttctgccttcagaggataattttttgtcttttgactagaaatggtgaggtcattgagattactgtggtgatctctggtgcttctgtagaaataagagttt--tctcccattggtgcagGGGCTTCAATGATGCTGTCAATGGATTTGGAGATGATGGCTGGGAGACTACAGTAACCGATGGTCTGGATGACGTTAGTGTGATGGTCAATGCAACCCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttgacataattgacaagttatggatactaacttaaacttcctcttttgcagGGGCTTTAATGAAGCAGTCAATGGGTTTGCAGATGATGGCTGGTCCATGTTAGAGAGTGATGGCATTGATGATGTCACCCTTCTTGTGAATTCCTCACCT
                            tactaac  putative branch site (score: 0)
                                        cttcctcttttgc  putative PPT
                               taacttaaa  TA-rich tract