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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtttgatcattctttactatcttactctgttctttctagttttctgtttttgtgatacgtttatttcagttatattgatttctcctttaactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTTTCACTGGATTGAATGCGGAACAAGTTTCCTTCATGACTAAAGAGTTCCA

Basic information

species Glycine max
transcript GLYMA06G08670.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G08670.2 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os01g55540.2 (Oryza sativa), 3'ss of exon 10
ttgtttgatcattctttactatcttactctgttctttctagttttctgtttttgtgatacgtttatttcagttatattgatttctcctttaac-----tggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTTTCACTGGATTGAATGCGGAACAAGTTTCCTTCATGACTAAAGAGTTCCA
      |    || | | |  | || ||   | | ||||   |  ||     || | ||| ||      | |  || | |||  |    | |          |||  || ||||| || ||||||||||| || || ||||| |||||||| |||||||||||  | ||    || |||||  | |||||||   | || | |||
-----aggagtttttcttccctttttctgaatccattctctatggctaaaagtgaggtacattgtcagaaatattaatcattgttgacatgataacatcatgcagAAACTCCTGGAGACTGGAGTCACATCATTAAGCAGATCGGAATGTTCACTTTCACTGGGCTCAACAGTGATCAAGTGGCTTTCATGAGGCAGGAATACCA

upper sequence: GLYMA06G08670.2 (Glycine max), 3'ss of exon 9
lower sequence: PP1S132_95V6.1 (Physcomitrella patens), 3'ss of exon 11
ttgtttgatcattctttactatcttac-tctgttctttctagttttctgtttttgtgatacgtttatt--tcagttatattgatttctcctttaactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTTTCACTGGATTGAATGCGGAACAAGTTTCCTTCATGACTAAAGAGTTCCA
     |||  |  |   |  |  |||  | | ||||    |  | | || |       | | || | |  |  | | | ||  |||||    ||      ||||||||||||||||||||| |||| || | || |||||||||||||| |||||||| ||||||||   |   |||||    ||||||||     | |  ||
acacatga--aagcgacaaaactttatgtgtattctgctcaagtatgtggtccaact-tgcattaagtgatttggtctctttttttctttgatattcatgcagGCACACCTGGCGATTGGACTCACGTTCTGAAGCAGATTGGAATGTTCACTTTCACGGGATTGAACAAGTCTCAAGTCGAGTTCATGACCCGTCAATATCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17023801|gb|BM094835.1|BM094835
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|38193158|gb|CF922364.1|CF922364
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTTGATGCTTTATGTTCCAGAG                         GCACACCTGGGGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|21995197|gb|BQ786725.1|BQ786725
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGCTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|6725700|gb|AW310099.1|AW310099
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|6746798|gb|AW317254.1|AW317254
EST:     TCGCATCATCAGTATGCGCCAAGAACTGTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATAGGAGTCACATTATCAAACAGATTGGAATGTATACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|4396219|gb|AI495216.1|AI495216
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|209719287|gb|BW679816.1|BW679816
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|192307221|gb|FK001221.1|FK001221
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCAATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|8285275|gb|BE022834.1|BE022834
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|254340295|gb|GR858420.1|GR858420
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|15662685|gb|BI700056.1|BI700056
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|7590445|gb|AW706197.1|AW706197
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCAATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|4293232|gb|AI442018.1|AI442018
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|8403661|gb|BE059295.1|BE059295
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|19270398|gb|BM886654.1|BM886654
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|37994228|gb|CF805974.1|CF805974
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|209714939|gb|BW650785.1|BW650785
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|254340294|gb|GR858419.1|GR858419
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|214003944|gb|DB985213.1|DB985213
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGACTAGAGTCACATTATCAAGCAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|6846499|gb|AW348789.1|AW348789
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|209696908|gb|BW660473.1|BW660473
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|254323228|gb|GR840033.1|GR840033
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|6848342|gb|AW350632.1|AW350632
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATCGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|18040205|gb|BM308499.1|BM308499
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACT
EST: gi|17963124|gb|BM269877.1|BM269877
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|15813436|gb|BI785711.1|BI785711
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtttttgtgatacgtttatttcagttatattgatttctcctttaactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTTTCACTGGATTGAATGCGGAACAAGTTTCCTTCATGACTAAAGAGTTCCA
                                         ctttaac  putative branch site (score: 3)
                                   tttctcctttaact  CT-rich tract
                tttatttcagttatat  TA-rich tract