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gtaagtagtgaatttatagaacattctttaaatttcccctgccagttttgtttgaggtacatcaagaggccttccaagttatgagtcaatgactgggaaagccaaaagctgattggttatcactgaatatactaaatgtagtaacttcttttttattcatttgctcttcaatacatagCAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGAAGGAGCTGTTTCAAGGGAGAGCATTAGTGCAGTGAAGAAGCTTGGTCAT
species | Glycine max |
transcript | GLYMA06G08480.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAA CAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAGGATGGCCTGAEST: gi|193724330|gb|FK657590.1|FK657590
genomic: ATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAAgtaagtagtg ... caatacatagCAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGA
EST: ATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAA CAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGAEST: gi|9985118|gb|BE659226.1|BE659226
genomic: ATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAAgtaagtagtg ... caatacatagCAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGA
EST: ATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAA CAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGAEST: gi|193529120|gb|FK484311.1|FK484311
genomic: ATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAAgtaagtagtg ... caatacatagCAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGA
EST: ATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAA CAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCEST: gi|13481114|gb|BG510457.1|BG510457
genomic: ATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAAgtaagtagtg ... caatacatagCAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCC
EST: ATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAA CAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGAEST: gi|193571532|gb|FK532763.1|FK532763
genomic: ATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAAgtaagtagtg ... caatacatagCAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGA
EST: ATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAA CAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGAEST: gi|22933892|gb|BU551031.1|BU551031
genomic: ATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAAgtaagtagtg ... caatacatagCAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGA
EST: ATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAA CAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGAEST: gi|193521719|gb|FK479492.1|FK479492
genomic: ATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAAgtaagtagtg ... caatacatagCAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGA
EST: ATGGAAAGGGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAA CAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGAEST: gi|207729049|gb|GD706385.1|GD706385
genomic: ATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAAgtaagtagtg ... caatacatagCAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGA
EST: ATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAA CAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGAEST: gi|120529842|gb|EH257976.1|EH257976
genomic: ATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAAgtaagtagtg ... caatacatagCAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGA
EST: ATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAA CAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGAEST: gi|208289609|gb|GE086756.1|GE086756
genomic: ATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAAgtaagtagtg ... caatacatagCAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGA
EST: ATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAA CAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGAEST: gi|208167418|gb|GD959554.1|GD959554
genomic: ATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAAgtaagtagtg ... caatacatagCAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGA
EST: ACCTATTCCAGAGCATATGATTTGCAGGTCTAA CAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGA
genomic: ACCTATTCCAGAGCATATGATTTGCAGGTCTAAgtaagtagtg ... caatacatagCAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGA
tgaatatactaaatgtagtaacttcttttttattcatttgctcttcaatacatagCAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGAAGGAGCTGTTTCAAGGGAGAGCATTAGTGCAGTGAAGAAGCTTGGTCAT
tagtaac putative branch site (score: 1)
cttcttttttattcat CT-rich tract
taacttcttttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagtgaatttatagaacattctttaaatttcccctgccagttttgtttgaggtacatcaagaggccttccaagttatgagtcaatgactgggaaagccaaaagctgattggttatcactgaatatactaaatgtagtaacttcttttttattcatttgctcttcaatacatagCAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGAAGGAGCTGTTTCAAGGGAGAGCATTAGTGCAGTGAAGAAGCTTGGTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC