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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcattctgatattcttgtgtaaaattatctttctattattagataatatattttaacccttgtttgaacaaactataatttttttcctctcaatatgcagGTTTGTGAGAGTTGCATCGGAGAAAGAAAGAGCTGTGAGCTAATGCAGAAGCTTAACTATTGCAATGAGGACATATGTGTAATTCTTGTTCGTGGTAAGG

Basic information

species Glycine max
transcript GLYMA06G07920.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G07920.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv04s0008g03170.t01 (Vitis vinifera), 3'ss of exon 10
-tcattctgatattcttgtgtaaaattatctttctattattagataatatattttaacccttgtttgaacaaactataatttttttcctctcaatatg-cagGTTTGTGAGAGTTGCATCGGAGAAAGAAAGAGCTGTGAGCTAATGCAGAAGCTTAACTATTGCAATGAGGACATATGTGTAATTCTTGTTCGTGGTAAGG
  | |||||   ||    | |  | |     | | | |  |||  || |   | ||||| || |||            |   | || || | | | ||  |||| ||||||  |||||| ||||||||| | ||||||||| ||||||| || |||||||||||||| ||||| ||| ||||     |||| ||||||||||
tgctttctggattttgaattttgagtatggctacaactcctagtgaaaa--atgtaaccattttttccttgtctctctaaagtgttgctatgattctggtagGTATGTGAGGTTTGCATTGGAGAAAGAGAAAGCTGTGAGTTAATGCAAAAACTTAACTATTGCAACGAGGATATACGTGTCTGCTTTGTACGTGGTAAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8670391|gb|BE191498.1|BE191498
EST:     TGAATTTTGAAAATGGGACTGGACAAATTTTAATTAAGACATGTCCTGAG                         GTTTGTGAGAGTTGCATCGGAGAAAGAAAGAGCTGTGAGCTAATGCAGAAG
genomic: TGAATTTTGAAAATGGGACTGGACAAATTTTAATTAAGACATGTCCTGAGgtaatccaaa ... caatatgcagGTTTGTGAGAGTTGCATCGGAGAAAGAAAGAGCTGTGAGCTAATGCAGAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatattttaacccttgtttgaacaaactataatttttttcctctcaatatgcagGTTTGTGAGAGTTGCATCGGAGAAAGAAAGAGCTGTGAGCTAATGCAGAAGCTTAACTATTGCAATGAGGACATATGTGTAATTCTTGTTCGTGGTAAGG
     ttttaac  putative branch site (score: 2)
                              taatttttttcctctc  putative PPT
                 tttgaacaaactataa  TA-rich tract