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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatatccaactgtatctgtgtgaccgactttgcctcaccatgttttctcttctcttttttaatatattctattgatgtcagGGATTTATCCTACAACAAGCTAACCGGAGAGATACCATTCAATATTGGGTATCTGCAAGTAGCAACTCT

Basic information

species Glycine max
transcript GLYMA06G05900.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G05900.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 9
gtatgtatatccaact--gtatctgtgtgaccgactttgcct--caccatgttttctcttctcttttttaatatattctattgatgtcagGGATTTATCCTACAACAAGCTAACCGGAGAGATACCATTCAATATTGGGTATCTGCAAGTAGCAACTCT
||| ||   ||  ||   ||    |    | ||       ||   | | || ||    |||    || |  | | |  | |  |||  ||||| || |||||||||  |||||| |||||||| || |||||||||||||  ||||||||||| ||  |
gtacgtgcttcttacccagtgaaggccaaatcgttgaaatctgttaacttggttataattcagaattgttttttctcttttgaatggtagGGACTTGTCCTACAACCGGCTAACAGGAGAGATTCCTTTCAATATTGGGTTCCTGCAAGTAGCTACATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193373521|gb|FK340293.1|FK340293
EST:     ACGGGCAGTATTCCTGAAAACATAGGCAATTGTACTACTTTAGGGGTCTT                         GGATTTATCCTACAACAAGCTAACCGGAGAGATACCATTCAATATTGGGTA
genomic: ACGGGCAGTATTCCTGAAAACATAGGCAATTGTACTACTTTAGGGGTCTTgtatgtatat ... ttgatgtcagGGATTTATCCTACAACAAGCTAACCGGAGAGATACCATTCAATATTGGGTA
EST: gi|207764192|gb|GD738007.1|GD738007
EST:     ACGGGCAGTATTCCTGAAAACATAGGCAATTGTACTACTTTAGGGGTCTT                         GGATTTATCCTACAACAAGCTAACCGGAGAGATACCATTCAATATTGGGTA
genomic: ACGGGCAGTATTCCTGAAAACATAGGCAATTGTACTACTTTAGGGGTCTTgtatgtatat ... ttgatgtcagGGATTTATCCTACAACAAGCTAACCGGAGAGATACCATTCAATATTGGGTA
EST: gi|207789285|gb|GD760787.1|GD760787
EST:     ACGGGCAGTATTCCTGAAAACATAGGCAATTGTACTACTTTAGGGGTCTT                         GGATTTATCCTACAACAAGCTAACCGGAGAGATAACATTCAATATTGGGTA
genomic: ACGGGCAGTATTCCTGAAAACATAGGCAATTGTACTACTTTAGGGGTCTTgtatgtatat ... ttgatgtcagGGATTTATCCTACAACAAGCTAACCGGAGAGATACCATTCAATATTGGGTA
EST: gi|193419263|gb|FK382759.1|FK382759
EST:     ACGGGCAGTATTCCTGAAAACATAGGCAATTGTACTACTTTAGGGGTCTT                         GGATTTATCCTACAACAAG
genomic: ACGGGCAGTATTCCTGAAAACATAGGCAATTGTACTACTTTAGGGGTCTTgtatgtatat ... ttgatgtcagGGATTTATCCTACAACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttgcctcaccatgttttctcttctcttttttaatatattctattgatgtcagGGATTTATCCTACAACAAGCTAACCGGAGAGATACCATTCAATATTGGGTATCTGCAAGTAGCAACTCT
                                           tattgat  putative branch site (score: 3)
                                        ttctatt  CT-rich tract
                       ttctcttttttaatat  TA-rich tract