Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattcatgaacttttcctcctatcgacatatatattctaagctgtctttttcttttacagGGTATCACAACTTACGAGTATGTTGTGGCCATGCGAACTCTAAGTGAACCACCTGGGCCTTCAGTTGATGGGGGTGAACAGCAGAGTCTACCATCGTCTC

Basic information

species Glycine max
transcript GLYMA06G01810.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01810.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv18s0122g00920.t01 (Vitis vinifera), 3'ss of exon 8
---------------------gtatattcatgaacttttcctcctatcgacatat-----atattctaagctgtctttttcttttacagGGTATCACAACTTACGAGTATGTTGTGGCCATGCGAACTCTAAGTGAACCACCTGGGCCTTCAGTTGATGGGGGTGAACAGCAGAGTCTACCATCGTCTC
                     || |||   |   | |     |   |  | ||||     | ||   ||  | |  | || |  | |||||||||||||| || ||||||||||| |||||| |||| |  |||||||| ||||| || || || ||||| || || ||||| ||| | ||||| ||||
gtgcattcctgaaatgctgctgtctatctctccccctccaaactattttaaatatctgaaacatgaaaaattatgctcttttgctgcagGGTATCACAACCTATGAGTATGTTGTTGCCATGAGAACCCAGAGTGAACCTCCTGGACCATCTGTAGATGGAGGAGAGCAGCAAAGTATGCCATCTTCTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193708040|gb|FK648086.1|FK648086
EST:     CTGTACCTTTGGGAGAGTTATTCTTTTTCCATATGATCCTGATACGAAAG                         GGTATCACAACTTACGAGTATGTTGTGGCCATGCGAACTCTAAGTGAACCA
genomic: CTGTACCTTTGGGAGAGTTATTCTTTTTCCATATGATCCTGATACGAAAGgtatattcat ... tcttttacagGGTATCACAACTTACGAGTATGTTGTGGCCATGCGAACTCTAAGTGAACCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaacttttcctcctatcgacatatatattctaagctgtctttttcttttacagGGTATCACAACTTACGAGTATGTTGTGGCCATGCGAACTCTAAGTGAACCACCTGGGCCTTCAGTTGATGGGGGTGAACAGCAGAGTCTACCATCGTCTC
                                    ctgtctttttctttta  CT-rich tract
                    acatatatattctaa  TA-rich tract