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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattacttccagcttgtgcttcattattcactgtttgtgcatttcttttgtctggaattctacatcttggttgttaaccattttgttccccttgtactgtagATACTTCACTTCCTGGGAATCGAAGGACCAAAAACATCAGACCCGAGCAAATATATTCGTTACATTTATAATAGAGTACATCTTGAGAATGCAATTGTTA

Basic information

species Glycine max
transcript GLYMA06G01520.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01520.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 10
---gtattacttccagcttgtgcttcattattcactgtttgtgcatttcttttgtctggaattctacatcttggttgttaaccattttgttccccttgtactgtagATACTTCACTTCCTGGGAATCGAAGGACCAAAAACATCAGACCCGAGCAAATATATTCGTTACATTTATAATAGAGTACATCTTGAGAATGCAATTGTTA
   | |||  |  |   ||    |   | |||||  | |  ||   ||  |||   |      ||| |  | |  |  | |  ||||| || || |  | |   ||||||| || || ||||| || ||||| |||||||| ||||| || ||||||||||| || || || ||||| ||||||  |||||||||||||| |||| 
gtagcatttttctccatttaatatctttaattcaa-gctcatggtgtttatttacttctttgactatagatagtctactca--attttatttccttaattc---agATACTCCATTTTCTGGGGATTGAAGGGCCAAAAACCTCAGATCCCAGCAAATATATACGGTATATCTATAACAGAGTAATTCTTGAGAATGCAACTGTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7693136|gb|AW761233.1|AW761233
EST:     ATCTTTGTGAGTTCATTGAAGATTGTGAGTTCACTTATTTGTCCACGCAG                         ATACTTCACTTCCTGGGAATCGAAGGACCAAAAACATCAGACCCGAGCGAA
genomic: ATCTTTGTGAGTTCATTGAAGATTGTGAGTTCACTTATTTGTCCACGCAGgtattacttc ... tgtactgtagATACTTCACTTCCTGGGAATCGAAGGACCAAAAACATCAGACCCGAGCAAA
EST: gi|151397771|gb|EV267644.1|EV267644
EST:     ATCTTTGTGAGTTCATTGAAGATTGTGAGTTCACTTATTTGTCCACGCAG                         ATACTTCACTTCCTGGGAATCGAAGGACCAAAAACATCAGACCCGAGCAAA
genomic: ATCTTTGTGAGTTCATTGAAGATTGTGAGTTCACTTATTTGTCCACGCAGgtattacttc ... tgtactgtagATACTTCACTTCCTGGGAATCGAAGGACCAAAAACATCAGACCCGAGCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtctggaattctacatcttggttgttaaccattttgttccccttgtactgtagATACTTCACTTCCTGGGAATCGAAGGACCAAAAACATCAGACCCGAGCAAATATATTCGTTACATTTATAATAGAGTACATCTTGAGAATGCAATTGTTA
                        tgttaac  putative branch site (score: 2)
                              ccattttgttcccctt  CT-rich tract
                                attttgtt  TA-rich tract