1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...cgctaggatgatcaaaataaaatgttaaggaacctgtttataggatttggcacattctgtcccaaatataatagttgttcgcatttgtgttctttgtcagGCTAAGATAGTAGGAAAAACAAGCTATGCCAGCAACTTGTCTGGGTATGATGAATATATTCCAATGGTAGACATACCTGTTGATGCTGGTTGGAAGAAGC
species | Glycine max |
transcript | GLYMA06G01260.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAGCGATGAAGAGTTATTCACACCTTACGCTGACCCCTGTTCATGAGGAA GCTAAGATAGTAGGAAAAACAAGCTATGCCAGCAACTTGTCTGGGTATGATEST: gi|193582078|gb|FK536947.1|FK536947
genomic: AAGCGATGAAGAGTTATTCACACCTTACGCTGACCCCTGTTCATGAGGAAgtgagttttg ... tctttgtcagGCTAAGATAGTAGGAAAAACAAGCTATGCCAGCAACTTGTCTGGGTATGAT
EST: AAGCGATGAAGAGTTATTCACACCTTACGCTGACCCCTGTTCATGAGGAA GCTAAGATAGTAGGAAAAACAAGEST: gi|12490007|gb|BG043528.1|BG043528
genomic: AAGCGATGAAGAGTTATTCACACCTTACGCTGACCCCTGTTCATGAGGAAgtgagttttg ... tctttgtcagGCTAAGATAGTAGGAAAAACAAG
EST: AAGCGATGAAGAGTTATTCACACCTTACGCTGACCCCTGTTCATGAGGAA GCTAAGATAGTAGGAAAAACAAGCTATGCCAGCAACTTGTCTGGGTATGATEST: gi|254335757|gb|GR847285.1|GR847285
genomic: AAGCGATGAAGAGTTATTCACACCTTACGCTGACCCCTGTTCATGAGGAAgtgagttttg ... tctttgtcagGCTAAGATAGTAGGAAAAACAAGCTATGCCAGCAACTTGTCTGGGTATGAT
EST: AAGCGATGAAGAGTTATTCACACCTTACGCTGACCCCTGTTCATGAGGAA GCTAAGATAGTAGGAAAAACAAGCTATGCCAGCAACTTGTCTGGGTATGATEST: gi|208081977|gb|GD882951.1|GD882951
genomic: AAGCGATGAAGAGTTATTCACACCTTACGCTGACCCCTGTTCATGAGGAAgtgagttttg ... tctttgtcagGCTAAGATAGTAGGAAAAACAAGCTATGCCAGCAACTTGTCTGGGTATGAT
EST: AAGCGATGAAGAGTTATTCACACCTTACGCTGACCCCAGTTCATGAGGAG GCTAAGGTAGTAGGAAAAACAAGCTATGCCAGCAACTTGTCTGGGTATGAT
genomic: AAGCGATGAAGAGTTATTCACACCTTACGCTGACCCCTGTTCATGAGGAAgtgagttttg ... tctttgtcagGCTAAGATAGTAGGAAAAACAAGCTATGCCAGCAACTTGTCTGGGTATGAT
tttggcacattctgtcccaaatataatagttgttcgcatttgtgttctttgtcagGCTAAGATAGTAGGAAAAACAAGCTATGCCAGCAACTTGTCTGGGTATGATGAATATATTCCAATGGTAGACATACCTGTTGATGCTGGTTGGAAGAAGC
ttctttgtc CT-rich tract
aaatataatagttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgctaggatgatcaaaataaaatgttaaggaacctgtttataggatttggcacattctgtcccaaatataatagttgttcgcatttgtgttctttgtcagGCTAAGATAGTAGGAAAAACAAGCTATGCCAGCAACTTGTCTGGGTATGATGAATATATTCCAATGGTAGACATACCTGTTGATGCTGGTTGGAAGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC