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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcccatctatctttaatattcttgtaatttaaggatatctattctagccctgccattctttattgtgaaacttactttgcttgaccacactatacatgtagtcttgatttgctcaatgtagagaattggttatttttttattgcagGACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAG

Basic information

species Glycine max
transcript GLYMA05G37850.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12691343|gb|BG157679.1|BG157679
EST:     AAGACCTTCAGG                         GACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC
genomic: AAGACCTTCAGGgttcccatct ... tttattgcagGACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC
EST: gi|13480024|gb|BG509367.1|BG509367
EST:     TTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGG                         GACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC
genomic: TTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGGgttcccatct ... tttattgcagGACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC
EST: gi|9900602|gb|BE609570.1|BE609570
EST:     CACTGGAAAGACCTTCAGG                         GACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC
genomic: CACTGGAAAGACCTTCAGGgttcccatct ... tttattgcagGACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC
EST: gi|193446481|gb|FK415812.1|FK415812
EST:     TTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGG                         GACTTTTTGGTCTCGGAAGACTTCCTTGTAT
genomic: TTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGGgttcccatct ... tttattgcagGACTTTTTGG-CT-GGAAGACTTCCTTGTAT
EST: gi|19453403|gb|BM954813.1|BM954813
EST:     TTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGG                         GACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC
genomic: TTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGGgttcccatct ... tttattgcagGACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC
EST: gi|120493888|gb|EH222055.1|EH222055
EST:     TTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGG                         GACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC
genomic: TTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGGgttcccatct ... tttattgcagGACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC
EST: gi|207704837|gb|GD684644.1|GD684644
EST:     TTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGG                         GACTTTTTGGCTGGAAGACTTCCTTGTATTCCTGGTGAATTACCAACTCTC
genomic: TTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGGgttcccatct ... tttattgcagGACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC
EST: gi|192303005|gb|FG997021.1|FG997021
EST:     TTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGG                         GACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC
genomic: TTGTCTATCGGAAAAACAGATATATCGACTGCACTGGAAAGACCTTCAGGgttcccatct ... tttattgcagGACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacatgtagtcttgatttgctcaatgtagagaattggttatttttttattgcagGACTTTTTGGCTGGAAGACTTCCTTGTATCCCTGGTGAATTACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAG
          tcttgat  putative branch site (score: 4)
                                      ttattttttt  putative PPT
                              agaattggttattttt  TA-rich tract