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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgtctagctctgtactacctttttgagatttttttgtcgaataataagatttttttttttagtactagttcatttactttctatataaactaaccgtttgttctcttggttggttactctaaaattgactcagAGCACATCATGGTTTTGGTTGGGTAGGGGAGTGGGCAAGCACTGG

Basic information

species Glycine max
transcript GLYMA05G33040.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33040.1 (Glycine max), 3'ss of exon 10
lower sequence: AT5G08660.1 (Arabidopsis thaliana), 3'ss of exon 11
gtaagatgtctagctctgtactacctttttgagatttttttgtcgaataataagatttttttttttagtactagttcatttactttctatataaactaaccgtttgttctct--tggttggttactctaaaattgactca--gAGCACATCATGGTTTTGGTTGGGTAGGGGAGTGGGCAAGCACTGG
                                             |  |        || |||  |  |  |   |     | |||  || |      |  ||||  ||| |  ||| |  | | | |  ||| |  |||  |||| |||||||||||||| ||||| || ||||||||||  || ||
------------------------------------------gtaagcatctgacccttctttcgtcattttgactttacaatttttgatctcggtatatagttttatctttaatggctaatgattgttgaatgggttcacagAGCGCATCATGGTTTTGGCTGGGTTGGAGAGTGGGCAAATACAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193591361|gb|FK547806.1|FK547806
EST:     ATGGAGAAAACATTGCATTGGCTGGTTCTGATTGCTACAAACACGGCCAA                         AGCACATCATGGTTTTGGTTGGGTAGGGGAGTGGGCAAGCACTGG
genomic: ATGGAGAAAACATTGCATTGGCTGGTTCTGATTGCTACAAACACGGCCAAgtaagatgtc ... attgactcagAGCACATCATGGTTTTGGTTGGGTAGGGGAGTGGGCAAGCACTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctatataaactaaccgtttgttctcttggttggttactctaaaattgactcagAGCACATCATGGTTTTGGTTGGGTAGGGGAGTGGGCAAGCACTGG
     tataaactaa  TA-rich tract