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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttggccccatgtgccattcttcattatgttagttaaaaaataaaacaaagaagaaaacaagtttgagcttttctgttttttcagCGAGGAAGATAGCTTATTTGATCAGGTTACCAACGGATGAACATAGGCTTAAAGTGGGGATTAGCTGGCTTACAAAATCTGCTATTGATTCTGTGTCATC

Basic information

species Glycine max
transcript GLYMA05G32900.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32900.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv07s0031g02690.t01 (Vitis vinifera), 3'ss of exon 10
-----gtaagttg-gccccatgtgccattcttcattatgttagttaaa-----aaataaaacaaagaagaaaacaagtttga--gcttttctgttttttca----gCGAGGAAGATAGCTTATTTGATCAGGTTACCAACGGATGAACATAGGCTTAAAGTGGGGATTAGCTGGCTTACAAAATCTGCTATTGATTCTGTGTCATC
     || |     ||||| | |  || |  |   |    | ||         |  |                 || |||||  | | || ||||| | ||    || |||||  | || ||||||||||| || ||||| ||||| ||  |||| ||||||||||| || ||||| ||||| ||||| || ||||| ||  || |
gtaaagttatccatgccccttttcacacttgtggatggcctggtctggtctctatttggttttggttgtggtttaattttgatgggtcttatgtttgtccatgcagCAAGGAAACTGGCATATTTGATCAGATTGCCAACAGATGAGCACCGGCTCAAAGTGGGGATCAGTTGGCTCACAAAGTCTGCCATAGATTCAGTTGCAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208176358|gb|GD979475.1|GD979475
EST:     TCCGAGTTTTATTGATGGGCTGACCTTAGAAGGTTCCATTGGTCATACTG                         CGAGGAAGATAGCTTATTTGATCAGGTTACCAACGGATGAACATAGGCTTA
genomic: TCCGAGTTTTATTGATGGGCTGACCTTAGAAGGTTCCATTGGTCATACTGgtaagttggc ... gttttttcagCGAGGAAGATAGCTTATTTGATCAGGTTACCAACGGATGAACATAGGCTTA
EST: gi|51334785|gb|CO978651.1|CO978651
EST:     TCCGAGTTTTATTGATGGGCTGACCTTAGAAGGTTCCATTGGTCATACTG                         CGAGGAAGATAGCTTATTTGATCAGGTTACCAACGGATGAACATAGGCTTA
genomic: TCCGAGTTTTATTGATGGGCTGACCTTAGAAGGTTCCATTGGTCATACTGgtaagttggc ... gttttttcagCGAGGAAGATAGCTTATTTGATCAGGTTACCAACGGATGAACATAGGCTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttaaaaaataaaacaaagaagaaaacaagtttgagcttttctgttttttcagCGAGGAAGATAGCTTATTTGATCAGGTTACCAACGGATGAACATAGGCTTAAAGTGGGGATTAGCTGGCTTACAAAATCTGCTATTGATTCTGTGTCATC
                                      cttttctgttttttc  CT-rich tract
     aaaaaataaaacaaag  TA-rich tract