1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gctgcatgcgaatatggatgttgcaacggaatttatttcattttcttaaaatgttatttctttgtttgattatcctaattaatacttgtgtaaaattcagGATGCTGAGAAGCATCTCTCAGATATGGTTGTGTCTAAGGCGCTGGTGGCAAAGATTGATAGGCCAATGGGGATAGTCTGTTTCCAAACAGCAAAGGATA
species | Glycine max |
transcript | GLYMA05G32030.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAAGAATTACATTGAAGAGACTTGCAGAGCTTTTGTGCCTCAGTATACAG GATGCTGAGAAGCATCTCTCAGATATGGTTGTGTCTAAGGCGCTGGTGGCAEST: gi|254341094|gb|GR854822.1|GR854822
genomic: CAAGAATTACATTGAAGAGACTTGCAGAGCTTTTGTGCCTCAGTATACAGgtttgtgatt ... taaaattcagGATGCTGAGAAGCATCTCTCAGATATGGTTGTGTCTAAGGCGCTGGTGGCA
EST: CAAGAATTACATTGAAGAGACTTGCAGAGCTTTTGTGCCTCAGTATACAG GATGCTGAGAAGCATCTCTCAGATATGGTTGTGTCTAAGGCGCTGGTGGCAEST: gi|18734862|gb|BM528428.1|BM528428
genomic: CAAGAATTACATTGAAGAGACTTGCAGAGCTTTTGTGCCTCAGTATACAGgtttgtgatt ... taaaattcagGATGCTGAGAAGCATCTCTCAGATATGGTTGTGTCTAAGGCGCTGGTGGCA
EST: CAAGAATTACATTGAAGAGACTTGCAGAGCTTTTGTGCCTCAGTATACAG GATGCTGAGAAGCATCTCTCAGATATGGTTGTGTCTAAGGCGEST: gi|193487785|gb|FK452766.1|FK452766
genomic: CAAGAATTACATTGAAGAGACTTGCAGAGCTTTTGTGCCTCAGTATACAGgtttgtgatt ... taaaattcagGATGCTGAGAAGCATCTCTCAGATATGGTTGTGTCTAAGGCG
EST: CAAGAATTACATTGAAGAGACTTGCAGAGCTTTTGTGCCTCAGTGTACAG GATGCTGAGAAGCATEST: gi|22524861|gb|BU083672.1|BU083672
genomic: CAAGAATTACATTGAAGAGACTTGCAGAGCTTTTGTGCCTCAGTATACAGgtttgtgatt ... taaaattcagGATGCTGAGAAGCAT
EST: CAAGAATTACATTGAAGAGACTTGCAGAGCTTTTGTGCCTCAGTATACAG GATGCTGAGAAGCATCTCTCAGATATGGTTGTGTCTAAGGCGCTGGTGGCA
genomic: CAAGAATTACATTGAAGAGACTTGCAGAGCTTTTGTGCCTCAGTATACAGgtttgtgatt ... taaaattcagGATGCTGAGAAGCATCTCTCAGATATGGTTGTGTCTAAGGCGCTGGTGGCA
ttaaaatgttatttctttgtttgattatcctaattaatacttgtgtaaaattcagGATGCTGAGAAGCATCTCTCAGATATGGTTGTGTCTAAGGCGCTGGTGGCAAAGATTGATAGGCCAATGGGGATAGTCTGTTTCCAAACAGCAAAGGATA
taattaatacttgtgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgcatgcgaatatggatgttgcaacggaatttatttcattttcttaaaatgttatttctttgtttgattatcctaattaatacttgtgtaaaattcagGATGCTGAGAAGCATCTCTCAGATATGGTTGTGTCTAAGGCGCTGGTGGCAAAGATTGATAGGCCAATGGGGATAGTCTGTTTCCAAACAGCAAAGGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- -gcatgcg
- - - - - - - - - tgttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acttgtg