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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attcttggaggtataagttgctttttgttaagcattattgcaatttgcaagtccaactaaccttgcgttgaaatgtgactaactgccttgtttcttgtagGTGCACTAACTGGAGCTATAACTACCCCCCTTGATGTCATCAAGACAAGGTTAATGGTTCAA

Basic information

species Glycine max
transcript GLYMA05G31870.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G31870.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G042027_T05 (Zea mays), 3'ss of exon 9
------------------------attcttggaggtataagttgctttttgttaagcattattgcaatttgcaagtccaactaa---ccttgcgttgaaatgtgact---aactgccttg----------tttcttgtagGTGCACTAACTGGAGCTATAACTACCCCCCTTGATGTCATCAAGACAAGGTTAATGGTTCAA
                         || ||| |  ||| |  |   ||          | | ||   | |    |     || |   |||  |   || |  | |||   | || |  ||          ||| |  |||| ||  | |||||||||||||| || |||||||||||||| |||||||| || |||||||| 
gtataactcgattgtctccctaatctttttgtaactatcaccttgcttcctcagtatctaactgtcttctcttgggttgtcttatttcctctccccgacaaatcacttccatctactctgggcttttgactttttgctagGCGCCATCACTGGAGCTATAACAACTCCCCTTGATGTCATGAAGACAAGATTGATGGTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120528780|gb|EH256914.1|EH256914
EST:     ACGAAGAAATCTGAATGATCCAGAAAATGCC-TTATTGGTGCTTTTGCCG                         GTGCACTAACTGGAGCTATAAATACCCCC
genomic: ACGAAGAAATCTGAATGATCCAGAAAATGCAATTATTGGTGCTTTTGCAGgtaaatgtgt ... tttcttgtagGTGCACTAACTGGAGCTATAACTACCCCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaagtccaactaaccttgcgttgaaatgtgactaactgccttgtttcttgtagGTGCACTAACTGGAGCTATAACTACCCCCCTTGATGTCATCAAGACAAGGTTAATGGTTCAA
                               gactaac  putative branch site (score: 1)
                                     ctgccttgtttctt  CT-rich tract
                      ttgaaat  TA-rich tract