Sequence
atgc intronic sequence ATGC exonic sequence...gctttattactgcagtatattttatatcttaacattatgaaatgctttgataaaatgttagcaactgttaagtgaaaatgttcctctttttgtaatacagAATTCATGGCCTCAAATCTGGAAAGATGTTGAAAGAGTTCCGTGGCCATACATCTTATGTGAATGATGCAATTTTTACAAATGATGGGAGTCGTGTTATT
Basic information
species | Glycine max |
transcript | GLYMA05G30430.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G30430.2 (Glycine max), 3'ss of exon 10
lower sequence: AT1G73720.1 (Arabidopsis thaliana), 3'ss of exon 10
gctttattactgcagtatattttatatcttaacattatgaaatgctttgataaaatgt--tagcaactgttaagtgaaaatgttcctctttttgtaatacagAATTCATGGCCTCAAATCTGGAAAGATGTTGAAAGAGTTCCGTGGCCATACATCTTATGTGAATGATGCAATTTTTACAAATGATGGGAGTCGTGTTATT
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attttccttttcatttggtagttatgtaagtttattggtagagcttctagtcgaatataatatcaaattcttatt--atatattttgctttattttatgcagAATCCATGGTTTGAAATCTGGGAAATTGTTGAAAGAATTTCGTGGTCACACATCTTATGTAAATCATGCCATCTTTACAAGTGATGGAAGCCGTATTATC
upper sequence: GLYMA05G30430.2 (Glycine max), 3'ss of exon 10
lower sequence: Vv17s0000g08930.t01 (Vitis vinifera), 3'ss of exon 10
gctttattactgcagtat-attttatatcttaac-attatgaaatgctttgataaaatgttagcaactgttaagtgaaa-atgttcctctttttgtaatacagAATTCATGGCCTCAAATCTGGAAAGATGTTGAAAGAGTTCCGTGGCCATACATCTTATGTGAATGATGCAATTTTTACAAATGATGGGAGTCGTGTTATT
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--tgtgaggcagttttatcaattttgatgttattgattatgaaatagga-gaggaccccttggttgttcaaatgttacttaccttatgctatgtttgatttagAATCCATGGACTGAAGTCTGGGAAACTGTTAAAGGAATTCCGTGGCCATTCATCTTATGTGAATGATGCTATATTTACAAATGACGGAGGTCGTGTTGTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208065883|gb|GD864380.1|GD864380EST: CATTTGACAGCACAGCAAG AATTTCTATGGCCTCAAATCTGGAAAGATGTTGAAAGAGTTCCGTGGCCAT
genomic: CATTTGACAGCACAGCAAGgtttttcatt ... tgtaatacagAA-TTC-ATGGCCTCAAATCTGGAAAGATGTTGAAAGAGTTCCGTGGCCAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgataaaatgttagcaactgttaagtgaaaatgttcctctttttgtaatacagAATTCATGGCCTCAAATCTGGAAAGATGTTGAAAGAGTTCCGTGGCCATACATCTTATGTGAATGATGCAATTTTTACAAATGATGGGAGTCGTGTTATT
ctttgat putative branch site (score: 5)
tgttcctctttttgt putative PPT
tttttgtaata TA-rich tract