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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatggtttagctcttacacgtgtataattacgtgatgcattcagtgtagttgtaacaacctacctcttcatgacacttcaatgtgcaatggttctatcagGGTCTAATCCAATCTGTATTTGAGCTTGATGATGGATCTGGTGTGGTTATCACTGTTGGGAAGTATGTAACACCAAATCACAAGGACATAAACGGCAATG

Basic information

species Glycine max
transcript GLYMA05G29820.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G29820.2 (Glycine max), 3'ss of exon 10
lower sequence: Vv10s0003g02730.t01 (Vitis vinifera), 3'ss of exon 10
---aatggtttagctcttacacgtgtataattacgtgatgcattcagtgtagttgtaacaacctacctcttcatgacacttcaatgtgcaatggttctatcagGGTCTAATCCAATCTGTATTTGAGCTTGATGATGGATCTGGTGTGGTTATCACTGTTGGGAAGTATGTAACACCAAATCACAAGGACATAAACGGCAATG
   |     |  |||| | |  |   | |||| |        |     |   || | |     ||     |  ||| |||   | |   |||     |  |||||||| || |||||||||||||| ||| |||||||||||||||||||| ||||  ||||||||||||| || |||||||||| ||||||||||   ||||
gttagaatatctgctcatcccagctaacaattccaaaccagttctgtagcgattctgaatttttaatgaatt-tgatact---aagctgaataccattgacagGGTCTGATACAATCTGTATTTGAACTTCATGATGGATCTGGTGTGGTTGTCACAATTGGGAAGTATGTCACCCCAAATCACATGGACATAAACAAAAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337327|gb|CO981193.1|CO981193
EST:     TTCATGATAATTGTAGAGCTGTTCTTGTTGGAAAACGCACATATGGCAAG                         GGTCTAATCCAATCTGTATTTGAGCTTGATGATGGATCTGGTGTGGTTATC
genomic: TTCATGATAATTGTAGAGCTGTTCTTGTTGGAAAACGCACATATGGCAAGgtttatgaat ... gttctatcagGGTCTAATCCAATCTGTATTTGAGCTTGATGATGGATCTGGTGTGGTTATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagttgtaacaacctacctcttcatgacacttcaatgtgcaatggttctatcagGGTCTAATCCAATCTGTATTTGAGCTTGATGATGGATCTGGTGTGGTTATCACTGTTGGGAAGTATGTAACACCAAATCACAAGGACATAAACGGCAATG
    ttgtaac  putative branch site (score: 2)
                                              ttctatc  putative PPT