Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttttgttctcaagtgtgatcaacttgaatatatatactttatttccaaagagacaacactgatatatggaatttctttgtttgtattaaccactgttggatggatattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAACAAGAAGGACGCACAGTTTTACGGCAGCATATTTGCAAAAATGAATAAA

Basic information

species Glycine max
transcript GLYMA05G28260.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22933209|gb|BU550348.1|BU550348
EST:     CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG                         GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: gi|57574566|gb|CX547541.1|CX547541
EST:     CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG                         GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: gi|7234543|gb|AW569879.1|AW569879
EST:     CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG                         GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: gi|10846141|gb|BF069114.1|BF069114
EST:     CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG                         GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: gi|7233418|gb|AW568764.1|AW568764
EST:     CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG                         GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: gi|58023136|gb|CX709877.1|CX709877
EST:     CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG                         GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: gi|10254106|gb|BE821872.1|BE821872
EST:     CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG                         GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: gi|11412722|gb|BF424733.1|BF424733
EST:     CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG                         GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: gi|209699581|gb|BW678084.1|BW678084
EST:     CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG                         GGATGTCAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: gi|58022830|gb|CX709571.1|CX709571
EST:     CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG                         GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: gi|58019828|gb|CX706570.1|CX706570
EST:     CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG                         GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: gi|6455054|gb|AW185737.1|AW185737
EST:     CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG                         GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: gi|51334753|gb|CO978619.1|CO978619
EST:     CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG                         GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: gi|7234663|gb|AW569998.1|AW569998
EST:     CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG                         GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
EST: gi|19346686|gb|BM891566.1|BM891566
EST:     CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAG                         GGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAAACAACAGgtatgctttt ... atattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgatatatggaatttctttgtttgtattaaccactgttggatggatattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAACAAGAAGGACGCACAGTTTTACGGCAGCATATTTGCAAAAATGAATAAA
                         tattaac  putative branch site (score: 1)
                 tttgtttgtattaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgcttttgttctcaagtgtgatcaacttgaatatatatactttatttccaaagagacaacactgatatatggaatttctttgtttgtattaaccactgttggatggatattaccagGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAGGTGAGAGAACACAACAAGAAGGACGCACAGTTTTACGGCAGCATATTTGCAAAAATGAATAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG