Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcgatattttaaatttgatctcaaggataaggcattacaaagggggtttgttctacttgtctttggtcatctctcatctttttcacatttttgttgcagTTTGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTTCCTCCCAAGCGTGGTATCACACAATATCACCCGATACGCTGAAAAGACT

Basic information

species Glycine max
transcript GLYMA05G26630.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193718027|gb|FK653803.1|FK653803
EST:     CCGACCTTGATGTCTTGGACCATCCCATTCTGAATTTTATATATTACCTG                         TTTGTGGAAATATTGCCTT
genomic: CCGACCTTGATGTCTTGGACCATCCCATTCTGAATTTTATATATTACCTGgtgagtttgt ... tttgttgcagTTTGTGGAAATATTGCCTT
EST: gi|151402287|gb|EV272100.1|EV272100
EST:     CCGACCTTGATGTCTTGGACCATCCCATTCTGAATTTTATATATTACCTG                         TTTGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGGACCATCCCATTCTGAATTTTATATATTACCTGgtgagtttgt ... tttgttgcagTTTGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|51334723|gb|CO978589.1|CO978589
EST:     CCGACCTTGATGTCTTGGACCATCCCATTCTGAATTTTATATATTACCTG                         TTTGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGGACCATCCCATTCTGAATTTTATATATTACCTGgtgagtttgt ... tttgttgcagTTTGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtttgttctacttgtctttggtcatctctcatctttttcacatttttgttgcagTTTGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTTCCTCCCAAGCGTGGTATCACACAATATCACCCGATACGCTGAAAAGACT
                         tctctcatctttttca  CT-rich tract
                                  tttttcacattttt  TA-rich tract