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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcgatattttaaatttgatctcaaggataaggcattacaaagggggtttgttctacttgtctttggtcatctctcatctttttcacatttttgttgcagTTTGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTTCCTCCCAAGCGTGGTATCACACAATATCACCCGATACGCTGAAAAGACT

Basic information

species Glycine max
transcript GLYMA05G26630.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51334723|gb|CO978589.1|CO978589
EST:     CCGACCTTGATGTCTTGGACCATCCCATTCTGAATTTTATATATTACCTG                         TTTGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGGACCATCCCATTCTGAATTTTATATATTACCTGgtgagtttgt ... tttgttgcagTTTGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|193718027|gb|FK653803.1|FK653803
EST:     CCGACCTTGATGTCTTGGACCATCCCATTCTGAATTTTATATATTACCTG                         TTTGTGGAAATATTGCCTT
genomic: CCGACCTTGATGTCTTGGACCATCCCATTCTGAATTTTATATATTACCTGgtgagtttgt ... tttgttgcagTTTGTGGAAATATTGCCTT
EST: gi|151402287|gb|EV272100.1|EV272100
EST:     CCGACCTTGATGTCTTGGACCATCCCATTCTGAATTTTATATATTACCTG                         TTTGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGGACCATCCCATTCTGAATTTTATATATTACCTGgtgagtttgt ... tttgttgcagTTTGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|151407580|gb|EV277395.1|EV277395
EST:     CCGACCTTGATGTCTTGGACCATCCCATTCTGAATTTTATATATTACCTG                         TTTGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGGACCATCCCATTCTGAATTTTATATATTACCTGgtgagtttgt ... tttgttgcagTTTGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|4396554|gb|AI495551.1|AI495551
EST:     CCGACCTTGATGTCTTGGACCATCCCATTCTGAATTTTATATATTACCTG                         TTTGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGGACCATCCCATTCTGAATTTTATATATTACCTGgtgagtttgt ... tttgttgcagTTTGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|209706564|gb|BW676112.1|BW676112
EST:     CCGACCTTGATGTCTTGGACCATCCCATTCTGAATTTTATATATTACCTG                         TTTGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGGACCATCCCATTCTGAATTTTATATATTACCTGgtgagtttgt ... tttgttgcagTTTGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|254327808|gb|GR834773.1|GR834773
EST:     CCGACCTTGATGTCTTGGACCATCCCATTCTGAATTTTATATATTACCTG                         TTTGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGGACCATCCCATTCTGAATTTTATATATTACCTGgtgagtttgt ... tttgttgcagTTTGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtttgttctacttgtctttggtcatctctcatctttttcacatttttgttgcagTTTGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTTCCTCCCAAGCGTGGTATCACACAATATCACCCGATACGCTGAAAAGACT
                         tctctcatctttttca  CT-rich tract
                                  tttttcacattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttcgatattttaaatttgatctcaaggataaggcattacaaagggggtttgttctacttgtctttggtcatctctcatctttttcacatttttgttgcagTTTGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTTCCTCCCAAGCGTGGTATCACACAATATCACCCGATACGCTGAAAAGACT

- - - - - - - - - - - - - - - - gcattac
- - - - - - - - - - - - - - - - - - - - - - gggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtctttg