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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttgtttacaaaatctagccgtaatacagttgccaaaataggtctacacaggaacattgatagttgcttcttttatgtagatttttcaactataagctattttctttaaacaatgtgttagcttttttcttaaacatatacttgagtttaattttactcctcacaaactaaaagtgatcattgggttacagAGTTGCCAAAAGTTGGGCCAATCAAATCTGAAGATATAGAGACAGCTTTAAGAAACACGAGGCCATCTGCTCATCTCCATGCCCACAAATATGACAAGTT

Basic information

species Glycine max
transcript GLYMA05G26100.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G26100.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv10s0003g03500.t01 (Vitis vinifera), 3'ss of exon 10
gtaggttgtttacaaaatctagccgtaatacAGTTGCCAAAATAGGTCTACACAGGAACATTGATAGTTGCTTCTTTTATGTAGATTTTTCAACTATAAGCTATTTTCTTTAAACAATGTGTTAGCTTTTTTCTTAAACATATACTTGAGTTTAATTTTACTCCTCACAAACTAAAAGTGATCATTGGGTTACAGAGTTGCCAAAAGTTGGGCCAATCAAATCTGAAGATATAGAGACAGCTTTAAGAAACACGAGGCCATCTGCTCATCTCCATGCCCACAAATATGACAAGTT
                                                                              || ||||  |    |  ||       ||||||  || ||      ||  ||||||| |      | |||     ||||||       |||  |   | | |  | ||||| |||||||| |||| || || || |||||||||  ||| || |||||||| ||||| |  ||||| || ||||||||||||||||||| ||||   ||||| |||||
----------------------------------------------------------------------------ccatctagacatacagagcatgcatatctttcttgtaaaaac-----aggatttttctaa------tgctttcaagtaatttg------cactga--gagattagttattggcttacagAGCTGCCGAAGGTGGGACCAATCAAACATGATGACATAGAGACGGCTTTGAAGAACACAAGACCATCTGCTCATCTCCATGTCCACCGTTATGATAAGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209715182|gb|BW665659.1|BW665659
EST:     ACGCCTAATGTCGCAACTTGAGCAGAGCCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAAATCTGAAGATATAGAGACAGCTTTAA
genomic: ACGCCTAATGTCGCAACTTGAGCAGAGCCAGGATGTGGTGCCTGAAGAAGgtaggttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAAATCTGAAGATATAGAGACAGCTTTAA
EST: gi|51335898|gb|CO979764.1|CO979764
EST:     ACGCCTAATGTCGCAACTTGAGCAGAGCCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAAATCTGAAGATATAGAGACAGCTTTAA
genomic: ACGCCTAATGTCGCAACTTGAGCAGAGCCAGGATGTGGTGCCTGAAGAAGgtaggttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAAATCTGAAGATATAGAGACAGCTTTAA
EST: gi|192328599|gb|FK023575.1|FK023575
EST:     ACGCCTAATGTCGCAACTTGAGCAGAGCCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAAATCTGAAGATATAGAGACAGCTTTAA
genomic: ACGCCTAATGTCGCAACTTGAGCAGAGCCAGGATGTGGTGCCTGAAGAAGgtaggttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAAATCTGAAGATATAGAGACAGCTTTAA
EST: gi|9259433|gb|BE347580.1|BE347580
EST:     ACGCCTAATGTCGCAACTTGAGCAGAGCCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAAATCTGAAGATATAGAGACAGCTGTAA
genomic: ACGCCTAATGTCGCAACTTGAGCAGAGCCAGGATGTGGTGCCTGAAGAAGgtaggttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAAATCTGAAGATATAGAGACAGCTTTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatacttgagtttaattttactcctcacaaactaaaagtgatcattgggttacagAGTTGCCAAAAGTTGGGCCAATCAAATCTGAAGATATAGAGACAGCTTTAAGAAACACGAGGCCATCTGCTCATCTCCATGCCCACAAATATGACAAGTT
                             aactaaa  putative branch site (score: 2)
     ttgagtttaatttta  TA-rich tract