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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgatttaagggacatttgcagagacatgctttggtatgctgcattttgaaagtatctcgctccctactttgaattttagctaggctcgtatgattatatccaccacttaagagcaaaagagtaatatattatttgctaagctaagttttcatggctcattttatatctcactctagtgtgactgtcaacattgtagAGTCGGGCTGGGTTACGTCTGTTCTTAGATTCTTTTGGTGGAACAGAACATTCCAATGCTTGTAATAATCCTACATCAACTGTTCTATCACAAACAAGTG

Basic information

species Glycine max
transcript GLYMA05G24890.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G24890.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv12s0055g00490.t01 (Vitis vinifera), 3'ss of exon 14
gtattgatttaagggacatttgcagagacatgctttggtatgctgcattttgaaagtatctcgctccctactttgaattttagctaggctcgtatgattatatccaccacttaagagcaaaagagtaatatattatttgctaagctaagttttcatggctcattttatatctcactctagtgtgactgtcaacattgtagAGTCGGGCTGGGTTACGTCTGTTCTTAGATTCTTTTGGTGGAACAGAACATTCCAATGCTTGTAATAATCCTACATCAACTGTTCTATCACAAACAAGTG--
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-----------------------------------------------------------------------------------------------cagaactccttttagactgaaacatgttcatcattgtttacctttttggttaa--ctgccttgctgtgctcatgggac-ttctcatgtga-tgtcaa-attgtagAATCGGGCTGGACTACGTCAATTCTTAGACTCATTTGGTGGAACAGAACAGTCTGCGGCAAGTGGTAATTCTATATCTGCTGGTCTTGCTCAG--GAGTCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204769|gb|BI427537.1|BI427537
EST:     AGGACTTGGTGAGCACCACACGGTATGTTTCATGGCCTCTCCACAATAAG                         AGTCGGGCTGGGTTACGTCTGTTCTTAGATTCTTTTGGTGGAACAGAACAT
genomic: AGGACTTGGTGAGCACCACACGGTATGTTTCATGGCCTCTCCACAATAAGgtattgattt ... aacattgtagAGTCGGGCTGGGTTACGTCTGTTCTTAGATTCTTTTGGTGGAACAGAACAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagttttcatggctcattttatatctcactctagtgtgactgtcaacattgtagAGTCGGGCTGGGTTACGTCTGTTCTTAGATTCTTTTGGTGGAACAGAACATTCCAATGCTTGTAATAATCCTACATCAACTGTTCTATCACAAACAAGTG
                       atctcac  putative branch site (score: 3)
 tcattttatat  TA-rich tract