Sequence
atgc intronic sequence ATGC exonic sequencegtattgatttaagggacatttgcagagacatgctttggtatgctgcattttgaaagtatctcgctccctactttgaattttagctaggctcgtatgattatatccaccacttaagagcaaaagagtaatatattatttgctaagctaagttttcatggctcattttatatctcactctagtgtgactgtcaacattgtagAGTCGGGCTGGGTTACGTCTGTTCTTAGATTCTTTTGGTGGAACAGAACATTCCAATGCTTGTAATAATCCTACATCAACTGTTCTATCACAAACAAGTG
Basic information
species | Glycine max |
transcript | GLYMA05G24890.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G24890.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv12s0055g00490.t01 (Vitis vinifera), 3'ss of exon 14
gtattgatttaagggacatttgcagagacatgctttggtatgctgcattttgaaagtatctcgctccctactttgaattttagctaggctcgtatgattatatccaccacttaagagcaaaagagtaatatattatttgctaagctaagttttcatggctcattttatatctcactctagtgtgactgtcaacattgtagAGTCGGGCTGGGTTACGTCTGTTCTTAGATTCTTTTGGTGGAACAGAACATTCCAATGCTTGTAATAATCCTACATCAACTGTTCTATCACAAACAAGTG--
| | | | | || | || ||| | | | ||| | | | ||| | || | ||| ||||| |||||| |||||||| ||||||||| |||||| |||||||| || ||||||||||||||||| || || || |||| ||| ||| ||| ||| | || |||
-----------------------------------------------------------------------------------------------cagaactccttttagactgaaacatgttcatcattgtttacctttttggttaa--ctgccttgctgtgctcatgggac-ttctcatgtga-tgtcaa-attgtagAATCGGGCTGGACTACGTCAATTCTTAGACTCATTTGGTGGAACAGAACAGTCTGCGGCAAGTGGTAATTCTATATCTGCTGGTCTTGCTCAG--GAGTCATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15204769|gb|BI427537.1|BI427537EST: AGGACTTGGTGAGCACCACACGGTATGTTTCATGGCCTCTCCACAATAAG AGTCGGGCTGGGTTACGTCTGTTCTTAGATTCTTTTGGTGGAACAGAACAT
genomic: AGGACTTGGTGAGCACCACACGGTATGTTTCATGGCCTCTCCACAATAAGgtattgattt ... aacattgtagAGTCGGGCTGGGTTACGTCTGTTCTTAGATTCTTTTGGTGGAACAGAACAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taagttttcatggctcattttatatctcactctagtgtgactgtcaacattgtagAGTCGGGCTGGGTTACGTCTGTTCTTAGATTCTTTTGGTGGAACAGAACATTCCAATGCTTGTAATAATCCTACATCAACTGTTCTATCACAAACAAGTG
atctcac putative branch site (score: 3)
tcattttatat TA-rich tract