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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtttgattatttgctttctgattttaactatataaagcaatttgaatggtttatattgactttagtcgacattttcccctcccaaatatatgtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTCTTGCAGGGGTTACTTAGATATGACCCCTCTGAAAGACTTACAGCCAAGG

Basic information

species Glycine max
transcript GLYMA05G02740.3
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G02740.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 3'ss of exon 11
------gttggtttgattatttgcttt-ctgattttaa-ctatataaagcaatttgaatggtttatattg--actttagtcg-acattttcccctcccaaatatat----------gtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTCTTGCAGGGGTTACTTAGATATGACCCCTCTGAAAGACTTACAGCCAAGG
      ||   ||   | ||||| ||   | ||   ||  | | | |     | | || | | | ||||   | ||| |||     |||  |    | | ||||            | |||||||  ||||||||||||| || ||||| ||||| ||||| |||||||| ||||| ||  | |||||||||||||| || ||  || | ||||||   |
gtttgtgtacattgattgatttggttcattcataccaagttttgtgagcttgtctaaaggttctttatttgtattttggtcatgtgtttgacaaatctatatatgcaccttttttggcagAACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTGTTGCAAGGTCTTCTTAGATATGACCCTTCAGACCGATTGACAGCCCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208243789|gb|GE040714.1|GE040714
EST:     CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCT
genomic: CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgttggtttga ... atatatgtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCT
EST: gi|254324743|gb|GR834168.1|GR834168
EST:     CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgttggtttga ... atatatgtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|207786906|gb|GD755379.1|GD755379
EST:     TCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: TCCTAGGCTTCAGgttggtttga ... atatatgtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|193542820|gb|FK504141.1|FK504141
EST:     AACCTCGAGGGAGGAATATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: AACCTCGAGGGA-GAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgttggtttga ... atatatgtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|213597528|gb|DB964433.1|DB964433
EST:     AGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: AGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgttggtttga ... atatatgtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|254323902|gb|GR840435.1|GR840435
EST:     CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgttggtttga ... atatatgtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|193511380|gb|FK470833.1|FK470833
EST:     AACCTC-AGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: AACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgttggtttga ... atatatgtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|207792096|gb|GD766550.1|GD766550
EST:     CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgttggtttga ... atatatgtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|193532781|gb|FK488471.1|FK488471
EST:     CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgttggtttga ... atatatgtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|193694771|gb|FK632911.1|FK632911
EST:     CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACNTCTC
genomic: CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgttggtttga ... atatatgtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|58016463|gb|CX703205.1|CX703205
EST:     CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgttggtttga ... atatatgtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaatggtttatattgactttagtcgacattttcccctcccaaatatatgtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTCTTGCAGGGGTTACTTAGATATGACCCCTCTGAAAGACTTACAGCCAAGG
             tattgac  putative branch site (score: 2)
         tttatattgacttta  TA-rich tract