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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcataatttatcacttttaattttattctcaagttttctagatcatattggtatttaagatttttcactttgtccatttcagGTATATTATGGTTGCCAAGGTTTCTGATGGAAGCGCTGAGACTTTTATCTCTGTCTTCAATCAGGAAGCTGAGAAGATCGTTGGATGCTCTGCTGATGAT

Basic information

species Glycine max
transcript GLYMA05G00370.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209698297|gb|BW667575.1|BW667575
EST:     GGATATTGGTGTGATGGATGTCAGAAAAGTGATGAACAGTGTAGTTTAAG                         GTATATTATGGTTGCCAAGGTTTCTGATGGAAGCGCTGAGACTTTTATCTC
genomic: GGATATTGGTGTGATGGATGTCAGAAAAGTGATGAACAGTGTAGTTTAAGgtcataattt ... tccatttcagGTATATTATGGTTGCCAAGGTTTCTGATGGAAGCGCTGAGACTTTTATCTC
EST: gi|58021049|gb|CX707791.1|CX707791
EST:     GGATATTGGTGTGATGGATGTCAGAAAAGTGATGAACAGTGTAGTGTAAG                         GTATATTATGGTTGCCAAGGTTTCTGATGGAAGCGCTGAGACTTTTATCTC
genomic: GGATATTGGTGTGATGGATGTCAGAAAAGTGATGAACAGTGTAGTTTAAGgtcataattt ... tccatttcagGTATATTATGGTTGCCAAGGTTTCTGATGGAAGCGCTGAGACTTTTATCTC
EST: gi|58017697|gb|CX704439.1|CX704439
EST:     GGATATTGGTGTGATGGATGTCAGAAAAGTGATGAACAGTGTAGTTTAAG                         GTATATTATGGTTGCCAAGGTTTCTGATGGAAGCGCTGAGACTTTTATCTC
genomic: GGATATTGGTGTGATGGATGTCAGAAAAGTGATGAACAGTGTAGTTTAAGgtcataattt ... tccatttcagGTATATTATGGTTGCCAAGGTTTCTGATGGAAGCGCTGAGACTTTTATCTC
EST: gi|9204400|gb|BE330624.1|BE330624
EST:     TGTGATGGATGTCAGAAAAGTGATGAACAGTGTAGTTTAAG                         GTATATTATGGTTGCCAAGGTTTCTGATGGAAGCGCTGATACTTTTATCTC
genomic: TGTGATGGATGTCAGAAAAGTGATGAACAGTGTAGTTTAAGgtcataattt ... tccatttcagGTATATTATGGTTGCCAAGGTTTCTGATGGAAGCGCTGAGACTTTTATCTC
EST: gi|193353568|gb|FK319364.1|FK319364
EST:     ATGTCAGAAAAGTGATGAACAGTGTAGTTTAAG                         GTATATTATGGTTGCCAAGGTTTCTGATGGAAGCGCTGAGACTTTTATCTC
genomic: ATGTCAGAAAAGTGATGAACAGTGTAGTTTAAGgtcataattt ... tccatttcagGTATATTATGGTTGCCAAGGTTTCTGATGGAAGCGCTGAGACTTTTATCTC
EST: gi|58018811|gb|CX705553.1|CX705553
EST:     GAACAGTGTAGTTTAAG                         GTATATTATGGTTGCCAAGGTTTCTGATGGAAGCGCTGAGACTTTTATCTC
genomic: GAACAGTGTAGTTTAAGgtcataattt ... tccatttcagGTATATTATGGTTGCCAAGGTTTCTGATGGAAGCGCTGAGACTTTTATCTC
EST: gi|51341200|gb|CO982517.1|CO982517
EST:     GGATATTGGTGTGATGGATGTCAGAAAAGTGATGAACAGTGTAGTTTAAG                         GTATATTATGGTTGCCAAGGTTTCTGATGGAAGCGCTGAGACTTTTATCTC
genomic: GGATATTGGTGTGATGGATGTCAGAAAAGTGATGAACAGTGTAGTTTAAGgtcataattt ... tccatttcagGTATATTATGGTTGCCAAGGTTTCTGATGGAAGCGCTGAGACTTTTATCTC
EST: gi|58014378|gb|CX701120.1|CX701120
EST:     GGATATTGGTGTGATGGATGTCAGAAAAGTGATGAACAGTGTAGTTTAAG                         GTATATTATGGTTGCCAAGGTTTCTGATGGAAGCGCTGAGACTTTTATCTC
genomic: GGATATTGGTGTGATGGATGTCAGAAAAGTGATGAACAGTGTAGTTTAAGgtcataattt ... tccatttcagGTATATTATGGTTGCCAAGGTTTCTGATGGAAGCGCTGAGACTTTTATCTC
EST: gi|51344922|gb|CO985655.1|CO985655
EST:     GGATATTGGTGTGATGGATGTCAGAAAAGTGATGAACAGTGTAGTTTAAG                         GTATATTATGGTTGCCAAGGTTTCTGATGGAAGCGCTGAGACTTTTATCTC
genomic: GGATATTGGTGTGATGGATGTCAGAAAAGTGATGAACAGTGTAGTTTAAGgtcataattt ... tccatttcagGTATATTATGGTTGCCAAGGTTTCTGATGGAAGCGCTGAGACTTTTATCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcaagttttctagatcatattggtatttaagatttttcactttgtccatttcagGTATATTATGGTTGCCAAGGTTTCTGATGGAAGCGCTGAGACTTTTATCTCTGTCTTCAATCAGGAAGCTGAGAAGATCGTTGGATGCTCTGCTGATGAT
                                 tttttcactttgtcc  CT-rich tract
                 atattggtatttaaga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcataatttatcacttttaattttattctcaagttttctagatcatattggtatttaagatttttcactttgtccatttcagGTATATTATGGTTGCCAAGGTTTCTGATGGAAGCGCTGAGACTTTTATCTCTGTCTTCAATCAGGAAGCTGAGAAGATCGTTGGATGCTCTGCTGATGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT