1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatgtgtcatcttgaaattgaacttactattatatacgtaatcagttttacattattgattgttggtttgctcattaatctggcctggctgaacaaaagTTATCAGATGAACCCAGCTAATTACAGAGAGGCTCTGACTGAGATGCGGGAGGATGAATCTGAAGGAGCTGACATTCTCTTG
species | Glycine max |
transcript | GLYMA04G42670.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCATTTAGAGAGGCACTAGACTCAAACCCCCGGTTTGGAGACAAGAAAAC TTATCAGATGAACCCAGCTAATTACAGAGAGGCTCTGACTGAGATGCGGGAEST: gi|7691223|gb|AW759354.1|AW759354
genomic: CCATTTAGAGAGGCACTAGACTCAAACCCCCGGTTTGGAGACAAGAAAACgtatgtgtca ... tgaacaaaagTTATCAGATGAACCCAGCTAATTACAGAGAGGCTCTGACTGAGATGCGGGA
EST: CCATTTAGAGAGGCACTAGACTCAAACCCCCGGTTTGGAGACAAGAAAAC TTATCAGATGAACCCAGCTAATTACAGAGAGGCTCTGACTGAGATGCGGGAEST: gi|6455519|gb|AW186202.1|AW186202
genomic: CCATTTAGAGAGGCACTAGACTCAAACCCCCGGTTTGGAGACAAGAAAACgtatgtgtca ... tgaacaaaagTTATCAGATGAACCCAGCTAATTACAGAGAGGCTCTGACTGAGATGCGGGA
EST: CCATTTAGAGAGGCACTAGACTCAAACCCCCGGTTTGGAGACAAGAAAAC TTATCAGATGAACCCAGCTAATTACAGAGAGGCTCTGACTGAGATGCGGGAEST: gi|208060750|gb|GD856686.1|GD856686
genomic: CCATTTAGAGAGGCACTAGACTCAAACCCCCGGTTTGGAGACAAGAAAACgtatgtgtca ... tgaacaaaagTTATCAGATGAACCCAGCTAATTACAGAGAGGCTCTGACTGAGATGCGGGA
EST: CCATTTAGAGAGGCACTAGACTCAAACCCCCGGTCTGGAGACAAGAAAAC TTATCAGATGAACCCAGCTAATTACAGAGAGGCTCTGACTGAGATGCGGGAEST: gi|23057473|gb|BU578156.1|BU578156
genomic: CCATTTAGAGAGGCACTAGACTCAAACCCCCGGTTTGGAGACAAGAAAACgtatgtgtca ... tgaacaaaagTTATCAGATGAACCCAGCTAATTACAGAGAGGCTCTGACTGAGATGCGGGA
EST: CCATTTAGAGAGGCACTAGACTCAAACCCCCGGTTTGGAGACAAGAAAAC TTATCAGATGAACCCAGCTAATTACAGAGAGGCTCTGACTGAGATGCGGGAEST: gi|208339448|gb|GE138566.1|GE138566
genomic: CCATTTAGAGAGGCACTAGACTCAAACCCCCGGTTTGGAGACAAGAAAACgtatgtgtca ... tgaacaaaagTTATCAGATGAACCCAGCTAATTACAGAGAGGCTCTGACTGAGATGCGGGA
EST: CCATTTAGAGAGGCACTAGACTCAAACCCCCGGTTTGGAGACAAGAAAAC TTATCAGATGAACCCAGCTAATTACAGAGAGGCTCTGACTGAGATGCGGGAEST: gi|17022525|gb|BM093559.1|BM093559
genomic: CCATTTAGAGAGGCACTAGACTCAAACCCCCGGTTTGGAGACAAGAAAACgtatgtgtca ... tgaacaaaagTTATCAGATGAACCCAGCTAATTACAGAGAGGCTCTGACTGAGATGCGGGA
EST: CCATTTAGAGAGGCACTAGACTCAAACCCCCGGTTTGGAGACAAGAAAAC TTATCAGATGAACCCAGCTAATTACAGAGAGGCTCTGACTGAGATGCGGGAEST: gi|7693203|gb|AW761299.1|AW761299
genomic: CCATTTAGAGAGGCACTAGACTCAAACCCCCGGTTTGGAGACAAGAAAACgtatgtgtca ... tgaacaaaagTTATCAGATGAACCCAGCTAATTACAGAGAGGCTCTGACTGAGATGCGGGA
EST: CCATTTAGAGAGGCACTAGACTCAGACCCGCGGTTTGGAGACAAGAAAAC TTATCAGATGAACCCAGCTAATTACAGAGAGGCTCTGACTGNAGATGCGG-
genomic: CCATTTAGAGAGGCACTAGACTCAAACCCCCGGTTTGGAGACAAGAAAACgtatgtgtca ... tgaacaaaagTTATCAGATGAACCCAGCTAATTACAGAGAGGCTCTGACTG-AGATGCGGG
gttttacattattgattgttggtttgctcattaatctggcctggctgaacaaaagTTATCAGATGAACCCAGCTAATTACAGAGAGGCTCTGACTGAGATGCGGGAGGATGAATCTGAAGGAGCTGACATTCTCTTG
cattaat putative branch site (score: 3)
attattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgtcatcttgaaattgaacttactattatatacgtaatcagttttacattattgattgttggtttgctcattaatctggcctggctgaacaaaagTTATCAGATGAACCCAGCTAATTACAGAGAGGCTCTGACTGAGATGCGGGAGGATGAATCTGAAGGAGCTGACATTCTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA