Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttaagaattatgttttgtgcttacagataagtatatgaaattgctgtttctgtttcttttttatctgcctgaagattttatctgcctcatccttgcagGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG

Basic information

species Glycine max
transcript GLYMA04G40750.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7285563|gb|AW598050.1|AW598050
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTG                         GCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGgtaattgctc ... atccttgcagGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|193307091|gb|FK268831.1|FK268831
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTG                         GCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGgtaattgctc ... atccttgcagGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|18038768|gb|BM307062.1|BM307062
EST:     TGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTG                         GCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGgtaattgctc ... atccttgcagGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|9203628|gb|BE329852.1|BE329852
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTG                         GCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGgtaattgctc ... atccttgcagGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|193726084|gb|FK658964.1|FK658964
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTCGAGTTCGCACTG                         GCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGgtaattgctc ... atccttgcagGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|58018945|gb|CX705687.1|CX705687
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTG                         GCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGgtaattgctc ... atccttgcagGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|58019174|gb|CX705916.1|CX705916
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTG                         GCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGgtaattgctc ... atccttgcagGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
EST: gi|151412507|gb|EV282319.1|EV282319
EST:     TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTG                         GCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA
genomic: TTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGgtaattgctc ... atccttgcagGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtttctgtttcttttttatctgcctgaagattttatctgcctcatccttgcagGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG
                                     tctgcctcatcctt  CT-rich tract
       tgtttcttttttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttttaagaattatgttttgtgcttacagataagtatatgaaattgctgtttctgtttcttttttatctgcctgaagattttatctgcctcatccttgcagGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - tgttttg
- - - - - - - - - -tgcttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgcctc