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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctgctgctttgttattgttcattgtcatataggttttaattactttaacttacggaaagcctgttacattctgcagtagATCTCTGGAGCGTTCTGTGTCTAGGTCACGATCTAGATCTCAATCAGCATCACCAATCAAATCTTCTAG

Basic information

species Glycine max
transcript GLYMA04G40740.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19453352|gb|BM954762.1|BM954762
EST:     AGCCCCAGCAGGAGCCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGTAG                       
genomic: AGCCCCAGCAGGAGCCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAG-A--AGgtgctgctgc ... tctgcagt
EST: gi|19453608|gb|BM955018.1|BM955018
EST:     AGCCCCAGCAGGAGCCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGTAG                       
genomic: AGCCCCAGCAGGAGCCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAG-A--AGgtgctgctgc ... tctgcagt
EST: gi|9819996|gb|BE555509.1|BE555509
EST:     AGCCCCAGCAGGAGCCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         ATCTCTGGAGCGTTCTGTGTCTAGGTCACGATCTAGATCTCAATCAGCATC
genomic: AGCCCCAGCAGGAGCCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtagATCTCTGGAGCGTTCTGTGTCTAGGTCACGATCTAGATCTCAATCAGCATC
EST: gi|21601642|gb|BQ611973.1|BQ611973
EST:     AGCCCCAGCAGGAGCCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCCCAGCAGGAGCCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-
EST: gi|21601642|gb|BQ611973.1|BQ611973
EST:     AGCCCCAGCAGGAGCCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAG                         T
genomic: AGCCCCAGCAGGAGCCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGgtgctgctgc ... tctgcagtag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatataggttttaattactttaacttacggaaagcctgttacattctgcagtagATCTCTGGAGCGTTCTGTGTCTAGGTCACGATCTAGATCTCAATCAGCATCACCAATCAAATCTTCTAG
                      aacttac  putative branch site (score: 2)
         ttttaattactttaac  TA-rich tract