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gtaaaatatctgaccttctcttattaaggcatggttatgtatctctatgtatatgctgaatcatttttatactatttgaactgacttgctattgtaacttcctttttcagAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCCATTGCGACAGTACGAGCCAGCGCACAAGAGCTGTTTCCTTTCTCCTCCT
species | Glycine max |
transcript | GLYMA04G39110.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TATGCAACAAAGCCAGTTCCTGTAACTTCACGAGCAGAAAGGAGCCCAAG AGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCCEST: gi|6133955|gb|AW132348.1|AW132348
genomic: TATGCAACAAAGCCAGTTCCTGTAACTTCACGAGCAGAAAGGAGCCCAAGgtaaaatatc ... cctttttcagAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCC
EST: TATGCAACAAAGCCAGTTCCTGTAACTTCACGAGCAGAAAGGAGCCCAAG AGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCC
genomic: TATGCAACAAAGCCAGTTCCTGTAACTTCACGAGCAGAAAGGAGCCCAAGgtaaaatatc ... cctttttcagAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCC
ctgaatcatttttatactatttgaactgacttgctattgtaacttcctttttcagAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCCATTGCGACAGTACGAGCCAGCGCACAAGAGCTGTTTCCTTTCTCCTCCT
ttgtaac putative branch site (score: 2)
taacttcctttttc CT-rich tract
atttttatactatttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatatctgaccttctcttattaaggcatggttatgtatctctatgtatatgctgaatcatttttatactatttgaactgacttgctattgtaacttcctttttcagAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCCATTGCGACAGTACGAGCCAGCGCACAAGAGCTGTTTCCTTTCTCCTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC