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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatatctggctttttgtcaactagatccttattacccatgtgaaaagctttcttttatcatcagtttatttaccttgtatataagctaactcgtcttttttgacctttttcttttggttttaaaatctgtttagAGCACATCATGGCTTTGGTTGGGTAGGGGAGTGGGCAAACACAGG

Basic information

species Glycine max
transcript GLYMA04G38370.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G38370.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os05g35530.1 (Oryza sativa), 3'ss of exon 11
gtaagatatctggctttttgtcaactagatccttattacccatgtgaaaagctttcttttatcatcagtttatttaccttgtatataagctaactcgtcttttttgacctttttcttttggttttaaaatctgtttagAGCACATCATGGCTTTGGTTGGGTAGGGGAGTGGGCAAACACAGG
                            ||   |  || || ||         | | | |  | |||  ||| ||||  | |  | || ||| |   |  ||  |||   | |      | || |    ||     |||||||| |||||||| |||||||| || ||||||||||| |||||
-------------------------gtaatatatcctatccttgca-------tgcctgtgacctca--ttacttacaat-tgcaaaaactatccatttcttactgagaatat------gattgtctgttcaccccagAGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26059777|gb|CA802691.1|CA802691
EST:     TGGAGACATC-TTAAGGTTGGTTGTCCCCCATGGCCACTAACACATCCAA                         AGCACATCATGGCTTTGGTTGGGTAGGGGAGTGGGCAAACACAGG
genomic: TGGAGAAAACATT-ACATTGGTTGTCCCCCATGGCCACTAACACATCCAAgtaagatatc ... atctgtttagAGCACATCATGGCTTTGGTTGGGTAGGGGAGTGGGCAAACACAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataagctaactcgtcttttttgacctttttcttttggttttaaaatctgtttagAGCACATCATGGCTTTGGTTGGGTAGGGGAGTGGGCAAACACAGG
                                              tctgttt  CT-rich tract
                          tttttcttttggtttt  TA-rich tract