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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgccaattgatttcaaggcaagtatttatttggacttgctagttgattgattctttacttaaatgaagtaatcataaatatgtttctaagTCAATTCTACAAATGGTTGCAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAG

Basic information

species Glycine max
transcript GLYMA04G37810.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37810.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G459746_T01 (Zea mays), 3'ss of exon 12
gtatttgccaattgatttcaaggcaagtatttatttggacttgctagttgattgattctttacttaaatgaagtaa---tcataaatatgtttctaagTCAATTCTACAAATGGTTGCAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAG
            |  ||| ||     | |||||     |||    ||      |   |||   |||  |||    |   |  |    ||||| |||| | |  || |       || ||||| |||||||||||||||||||| |||||||| |||| | || ||   || || ||||||||  |  ||
-----------gtagtttgaaactttgaattta-----actcataagcgaccggggccttgtattagttgagactacttttgtgttcatgttactaaatgagatcaatctcctttt-cagAATAAATGTAATGTTGGCTATGCTTTCATCAACATGACCAATGCTCAGCATATCATTCCATTTTATCAG

upper sequence: GLYMA04G37810.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G451716_T01 (Zea mays), 3'ss of exon 12
------------gtatttgccaattgatttcaaggcaagtatttatttggacttgctagttgattgattctttacttaaatgaagtaatcataaatatgtttctaagTCAATTCTACAAATGGTTGCAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAG
            ||||| | |  ||| ||   ||  |  | |||| ||  || ||||  ||  ||  ||   |  ||   || | ||| ||| ||||   | |       ||| |           ||||| || || |||||||| |||||||||||||| |||||| ||||||   | ||| |||||||  | |||
gtgagtggtctggtattagtc--ttggttagcagatagttctttaattttacctgcttctttgttacttgcatgtttgt-tggactaaacattaataatctcc-------atttt-----------cagAATAAGTGCAATGTTGGTTATGCATTCATCAACATGATCAATCCTGACAATATTGTTCCATTTTATAAG

upper sequence: GLYMA04G37810.1 (Glycine max), 3'ss of exon 10
lower sequence: EFJ29695 (Selaginella moellendorffii), 3'ss of exon 7
gtatttgccaattgatttcaaggcaagtatttatttggacttgctagttgattgattctttacttaaatgaagtaatcataaatatgtttctaagTCAATTCTACAAATGGTTG--CAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAG
                                                               | |  | | |  | || || | | |  ||         |  |   ||  ||  ||||| ||||| || |||||||||||||||||||| |||| ||| || |  || ||  | || ||  |||||
--------------------------------------------------------------gtgattttaggcgagcaaaagtgtttccctggtattgaccggcttttgcctgtgcagAATAAATGCAACGTTGGCTATGCATTCATCAACATGACCGAGCCAGCTCACATCGTCCCCTTTTACAAG

upper sequence: GLYMA04G37810.1 (Glycine max), 3'ss of exon 10
lower sequence: EFJ28200 (Selaginella moellendorffii), 3'ss of exon 9
gtatttgccaattgatttcaaggcaagtatttatttggacttgctagttgattgattctttacttaaatgaagtaatcataaatatgtttctaagTCAATTCTACAAATGGTTG--CAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAG
                                                               | |  | | |  | || || | | |  ||        ||  |   ||  ||  ||||||||||| || |||||||||||||||||||| |||| ||| || |  || ||  | || ||  |||||
--------------------------------------------------------------gtgattttaggcgagcaaaagtgtttccctggtattgatcggcttttgcctgtgcagAACAAATGCAACGTTGGCTATGCATTCATCAACATGACCGAGCCAGCTCACATCGTCCCCTTTTACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctagttgattgattctttacttaaatgaagtaatcataaatatgtttctaagTCAATTCTACAAATGGTTGCAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAG
         gattgat  putative branch site (score: 4)
                                             tgtttct  putative PPT
                  tttacttaaatgaagt  TA-rich tract