Sequence
atgc intronic sequence ATGC exonic sequencegtaatgaaattgctactgctctctactttctgtgaaaagaagacattttccaatctttatttttcctttgatctgaaaaatcacgacttaaaaaaatgagaagtatattttgtaaaaggcagttcatccatccttataattcttgtgacatgtttcttctatgctttttagGCATATGTGCAGATATAGCACAATCCAAGCATGAGCATTGGTCTTCTCTAGCTCCTCTTCCTTTTGAACTTGTCATCTCTGCTGGACAAAAGGCTAAGGA
Basic information
species | Glycine max |
transcript | GLYMA04G37710.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G37710.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os01g70320.1 (Oryza sativa), 3'ss of exon 10
gtaatgaaattgctactgctctctactttctgtgaaaagaagacattttccaatctttatttttcctttgatctgaaaaatcacgacttaaaaaaatgagaagtatattttgtaaaaggcagttcatccatccttataattcttgtgacatgtttcttctatgctttttagGCATATGTGCAGATATAGCACAATCCAAGCATGAGCATTGGTCTTCTCTAGCTCCTCTTCCTTTTGAACTTGTCATCTCTGCTGGACAAAAGGCTAAGGA
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----------------------------------------------------------------tctcgaaaatgcttaattctagtttgcacatgatgttgaaatgtactgttaac-----tttttccctgtccgtgatttatctga--tggcccattaataacttgaagGAGTTTATCCCGAGATTGCGGTATCAAAGCATGAACATTGGTCATCATTAGCTCCTCTTCCCCTTGAGGTTGTTCTCTCTGCTGGTCAAAAGGCTAAGGA
upper sequence: GLYMA04G37710.1 (Glycine max), 3'ss of exon 10
lower sequence: AT5G23700.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaatgaaattgctactgctctctactttctgtgaaaagaagacattttccaatctttatttttcctttgatctgaaaaatcacgacttaaaaaaatgagaagtatattttgtaaaaggcagttcatccatccttataattcttgtgacatgtttcttctatgctttttagGCATATGTGCAGATATAGCACAATCCAAGCATGAGCATTGGTCTTCTCTAGCTCCTCTTCCTTTTGAACTTGTCATCTCTGCTGGACAAAAGGCTAAGGA
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-----------gtaagtaatgcatccatcttgtgaacgtgttctcattgatacacttactcagctctctaattttggtca--aaggcttgtagttgtggtgag-gtagtttatttattaaaattcttagatatttggttttcctgtggcttac-----ctatg-----tagGCATTTGTGCTGACATAGCACCATCCAGGCATGAAAAATGGTCGGCTCTGGCTCCTCTTCCATTTGAGCTGGTCATATCTGCAGCACAAAAGACCAAGGA
upper sequence: GLYMA04G37710.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv17s0000g00390.t01 (Vitis vinifera), 3'ss of exon 10
gtaatgaaattgctactgctctctactttctgtgaaaagaagacattttccaatctttatttttcctttgatctgaaaaatcacgacttaaaaaaatgagaagtatattttgtaaaaggcagttcatccatccttataattcttgtgacatgtttcttctatgctttttagGCATATGTGCAGATATAGCACAATCCAAGCATGAGCATTGGTCTTCTCTAGCTCCTCTTCCTTTTGAACTTGTCATCTCTGCTGGACAAAAGGCTAAGGA
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-----------------------------------------------------------attttgttttggttttattttttatttttgaaatgaatacctaatctattcagtca---------tatctgag---atgtgttttgtctgttgttgctttcttgctgtacagCCATCTGTGCAGACATAGCATTATCAAAGCATGAGCATTGGTCATCTTTAGCACCTTTGCCATTTGAAGTCGTCATTTCAGCTGGACAAAAGGCCAAGGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23064600|gb|BU579373.1|BU579373EST: CTTGAAGTTATGTTGGCTAGCCCGCTACTGGGGTCTTGCTGTAAAACATG GCATATGTGCAGATATAGCACAATCCAAGCATGAGCATTGGTCTTCTCTAG
genomic: CTTGAAGAGATGTTGGCTAGCCCGCTACTGGGGTCTTGCTGTAAAACATGgtaatgaaat ... tgctttttagGCATATGTGCAGATATAGCACAATCCAAGCATGAGCATTGGTCTTCTCTAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aggcagttcatccatccttataattcttgtgacatgtttcttctatgctttttagGCATATGTGCAGATATAGCACAATCCAAGCATGAGCATTGGTCTTCTCTAGCTCCTCTTCCTTTTGAACTTGTCATCTCTGCTGGACAAAAGGCTAAGGA
tttcttctatgctttt CT-rich tract
ttataattctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatgaaattgctactgctctctactttctgtgaaaagaagacattttccaatctttatttttcctttgatctgaaaaatcacgacttaaaaaaatgagaagtatattttgtaaaaggcagttcatccatccttataattcttgtgacatgtttcttctatgctttttagGCATATGTGCAGATATAGCACAATCCAAGCATGAGCATTGGTCTTCTCTAGCTCCTCTTCCTTTTGAACTTGTCATCTCTGCTGGACAAAAGGCTAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA