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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatataaaaaggaaatttctttcatgcaagatccttcctaaaaaataaaaaaataactgtgatattgaagcagGTCTGTGCAAGTGTTTCTTCTGAATCCATAAATATGACCGAGCTTCAACAATGGAACGAACTATATGGTGAAGGTGGTTCAAGAGTTAAAAAAGCATTAA

Basic information

species Glycine max
transcript GLYMA04G37050.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258265|gb|BE346412.1|BE346412
EST:     CAGATATCCGATCTTTAAACATGGAAGATTTCAAATATGCTCATCAACAG                         GTCTGTGCAAGTGTTTCTTCTGAATCCATAAATATGACCGAGCTTCAACAA
genomic: CAGATATCCGATCTTTAAACATGGAAGATTTCAAATATGCTCATCAACAGgtatataaaa ... attgaagcagGTCTGTGCAAGTGTTTCTTCTGAATCCATAAATATGACCGAGCTTCAACAA
EST: gi|58017319|gb|CX704061.1|CX704061
EST:     CAGATATCCGATCTTTAAACATGGAAGATTTCAAATATGCTCATCAACAG                         GTCTGTGCAAGTGTTTCTTCTGAATCCATAAATATGACCGAGCTTCAACAA
genomic: CAGATATCCGATCTTTAAACATGGAAGATTTCAAATATGCTCATCAACAGgtatataaaa ... attgaagcagGTCTGTGCAAGTGTTTCTTCTGAATCCATAAATATGACCGAGCTTCAACAA
EST: gi|10843383|gb|BF066683.1|BF066683
EST:     CAGATATCCGATCTTTAAACATGGAAGATTTCAAATATGCTCATCAACAG                         GTCTGTGCAAGTGTTTCTTCTGAATCCATAAATATGACCGAGCTTCAACAA
genomic: CAGATATCCGATCTTTAAACATGGAAGATTTCAAATATGCTCATCAACAGgtatataaaa ... attgaagcagGTCTGTGCAAGTGTTTCTTCTGAATCCATAAATATGACCGAGCTTCAACAA
EST: gi|10845533|gb|BF071131.1|BF071131
EST:     CAGATATCCGATCTTTAAACATGGAAGATTTCAAATATGCTCATCAACAG                         GTCTGTGCAAGTGTTTCTTCTGAATTCATAAATATG
genomic: CAGATATCCGATCTTTAAACATGGAAGATTTCAAATATGCTCATCAACAGgtatataaaa ... attgaagcagGTCTGTGCAAGTGTTTCTTCTGAATCCATAAATATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcatgcaagatccttcctaaaaaataaaaaaataactgtgatattgaagcagGTCTGTGCAAGTGTTTCTTCTGAATCCATAAATATGACCGAGCTTCAACAATGGAACGAACTATATGGTGAAGGTGGTTCAAGAGTTAAAAAAGCATTAA
                                aaataac  putative branch site (score: 2)
                    taaaaaataaaaaaat  TA-rich tract