Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttctcaaatctgtcacggaaaaaatttatcatgatttcagattttactaaatgaagcaatgttgactgtagagtagttcatgttggcttctcacatttactcaacttttttccaaataattgcagAACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTTTTGCAGGGGCTACTTAGATATGACCCCTTTGAAAGACTTACAGCTAGGG

Basic information

species Glycine max
transcript GLYMA04G36360.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G36360.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 3'ss of exon 11
gtttgttctcaa-atctgtcacggaaaaaatttatcatgatttcagattttactaaatgaagcaatgttgactgtagagtagttcatgttggcttctcacatttactcaacttttttccaaataattgcagAACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTTTTGCAGGGGCTACTTAGATATGACCCCTTTGAAAGACTTACAGCTAGGG
||||||   ||     ||    ||   |    || || | |||  ||  ||    || |   |  | ||     |   ||  |   | ||| |   ||  || ||  || |||||||          ||||||||| |||||||||||||| || ||||| ||||||||||| |||||||| ||||| || || |||||||||||||| |  ||  || | |||||    |
gtttgtgtacattgattgatttggttcattcataccaagttttgtgagcttgtctaaaggttctttatttgtattttggtcatgtgt-ttgacaaatc-tatatatgcaccttttttg---------gcagAACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTGTTGCAAGGTCTTCTTAGATATGACCCTTCAGACCGATTGACAGCCCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27446236|gb|CA953359.1|CA953359
EST:     CAATCTCACGAGAGAGTATTAAAGCTGTTATGAAGCTTCCCCGACTACAG                         AACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
genomic: CAATCTCACGAGAGAGTATTAAAGCTGTTATGAAGCTTCCCCGACTACAGgtttgttctc ... ataattgcagAACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
EST: gi|254346650|gb|GR856372.1|GR856372
EST:     CAATCTCACGAGAGAGTATTAAAGCTGTTATGAAGCTTCCCCGACTACAG                         AACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATTTTATACATTTT
genomic: CAATCTCACGAGAGAGTATTAAAGCTGTTATGAAGCTTCCCCGACTACAGgtttgttctc ... ataattgcagAACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
EST: gi|254346649|gb|GR856371.1|GR856371
EST:     CAATCTCACGAGAGAGTATTAAAGCTGTTATGAAGCTTCCCCGACTACAG                         AACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
genomic: CAATCTCACGAGAGAGTATTAAAGCTGTTATGAAGCTTCCCCGACTACAGgtttgttctc ... ataattgcagAACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
EST: gi|58021621|gb|CX708362.1|CX708362
EST:     CAATCTCACGAGAGAGTATTAAAGCTGTTATGAAGCTTCCCCGACTACAG                         AACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
genomic: CAATCTCACGAGAGAGTATTAAAGCTGTTATGAAGCTTCCCCGACTACAGgtttgttctc ... ataattgcagAACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
EST: gi|8401586|gb|BE057150.1|BE057150
EST:     CAATCTCACGAGAGAGTATTAAAGCTGTTATGAAGCTTCCCCGACTACAG                         AACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT
genomic: CAATCTCACGAGAGAGTATTAAAGCTGTTATGAAGCTTCCCCGACTACAGgtttgttctc ... ataattgcagAACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtagttcatgttggcttctcacatttactcaacttttttccaaataattgcagAACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTTTTGCAGGGGCTACTTAGATATGACCCCTTTGAAAGACTTACAGCTAGGG
                 ttctcac  putative branch site (score: 2)
                                   ttttttccaaataatt  TA-rich tract