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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtctctctctctctctctctcttgcacacacacacaaacacacacacacaccccccccattgatatgcttttgatgtaaggatggatatcttagcacattaagaatgcataaatatgattttcaaatgcaataaatttttcttctcttttcattaacagatgactggcctgtactgaattttctaatctgcagTTTGATATCCTATGGGATGCACTGTCTGGTCAAGAACACCTCCAACTCTTCGCTACTATTAAAGGCCTGTCCCCATCTTCCATAAAATCA

Basic information

species Glycine max
transcript GLYMA04G34140.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G34140.1 (Glycine max), 3'ss of exon 10
lower sequence: AT3G47730.1 (Arabidopsis thaliana), 3'ss of exon 10
gtgtctctctctctctctctctcttgcacacacacacaaacacacacacacaccccccccattgatatgcttttgatgtaaggatggatatcttagcacattaagaatgcataaatatgattttcaaatgcaataaatttttcttctcttttcattaacagatgactggcctgtactgaattttctaatctgcagTTTGATATCCTATGGGATGCACTGTCTGGTCAAGAACACCTCCAACTCTTCGCTACTATTAAAGGCCTGTCCCCATCTTCCATAAAATCA
                                                                                  |   |  || ||       ||        |     |   ||| |   |  | | || ||| || |  ||||| | |   |||||   |||||              ||  ||||||||||| || ||||||||  |||||||| ||||||||||| ||||||| ||||  || |||||  || | || || || || || || 
----------------------------------------------------------------------------------gtgagccattttttgttgctatctgcttctggcatttgctttaattagttacagatatttgttatgctttcaatgatttatgacattcctgt--------------tccacagTTTGATATTCTTTGGGATGCTTTGTCTGGTGAAGAACACCTCAAACTCTTTGCTAGCATCAAAGGGTTGCCACCTTCATCAATCAACTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttctcttttcattaacagatgactggcctgtactgaattttctaatctgcagTTTGATATCCTATGGGATGCACTGTCTGGTCAAGAACACCTCCAACTCTTCGCTACTATTAAAGGCCTGTCCCCATCTTCCATAAAATCA
                                          ttctaat  putative branch site (score: 2)
                                        ttttct  CT-rich tract
                                      aattttctaat  TA-rich tract