1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtacttttatgagtgtcaaaagtatgggtggaaaataaggatgataccatgattgattgctgtgctgtggtttcaatacaattttgatgtttttttgcagGAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGATTTGAATCTGATGATGACTCTTCTCCAAGGAAAATAACCACCCATCGGC
species | Glycine max |
transcript | GLYMA04G32540.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATGAAGAAGCCGAACAAGTTAATGATGCATCAGATGATGGGGAAGAGGAG GAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGAEST: gi|5820399|gb|AI988605.1|AI988605
genomic: ATGAAGAAGCCGAACAAGTTAATGATGCATCAGATGATGGGGAAGAGGAGgtactgctta ... ttttttgcagGAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
EST: ATGAAGAAGCCGAACAAGTTAATGATGCATCAGATGATGGGGAAGAGGAG GAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGAEST: gi|120495484|gb|EH223651.1|EH223651
genomic: ATGAAGAAGCCGAACAAGTTAATGATGCATCAGATGATGGGGAAGAGGAGgtactgctta ... ttttttgcagGAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
EST: ATGAAGAAGCCGAACAAGTTAATGATGCATCAGATGATGGGGAAGAGGAG GAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGAEST: gi|31475866|gb|CD417894.1|CD417894
genomic: ATGAAGAAGCCGAACAAGTTAATGATGCATCAGATGATGGGGAAGAGGAGgtactgctta ... ttttttgcagGAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
EST: TAATGATGCATCAGATGATGGGGAAGAGGAG GAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGAEST: gi|26058928|gb|CA801842.1|CA801842
genomic: TAATGATGCATCAGATGATGGGGAAGAGGAGgtactgctta ... ttttttgcagGAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
EST: ATGAAGAAGCCGAACAAGTTAATGATGCATCAGATGATGGGGAAGAGGAG GAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGAEST: gi|7690967|gb|AW759102.1|AW759102
genomic: ATGAAGAAGCCGAACAAGTTAATGATGCATCAGATGATGGGGAAGAGGAGgtactgctta ... ttttttgcagGAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
EST: ATGAAGAAGCCGAACAAGTTAATGATGCATCAGATGATGGGGAAGAGGAG GAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGAEST: gi|7692650|gb|AW760751.1|AW760751
genomic: ATGAAGAAGCCGAACAAGTTAATGATGCATCAGATGATGGGGAAGAGGAGgtactgctta ... ttttttgcagGAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
EST: ATGAAGAAGCCGAACAAGTTAATGATGCATCAGATGATGGGGAAGAGGAG GAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGAEST: gi|6667143|gb|AW278602.1|AW278602
genomic: ATGAAGAAGCCGAACAAGTTAATGATGCATCAGATGATGGGGAAGAGGAGgtactgctta ... ttttttgcagGAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
EST: ATGAAGAAGCCGAACAAGTTAATGATGCATCAGATGATGGGGAAGAGGAG GAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGAEST: gi|23728996|gb|BU762574.1|BU762574
genomic: ATGAAGAAGCCGAACAAGTTAATGATGCATCAGATGATGGGGAAGAGGAGgtactgctta ... ttttttgcagGAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
EST: ATGAAGAAGCCGAACAAGTTAATGATGCATCAGATGATGGGGAAGAGGAG GAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGAEST: gi|15199583|gb|BI423905.1|BI423905
genomic: ATGAAGAAGCCGAACAAGTTAATGATGCATCAGATGATGGGGAAGAGGAGgtactgctta ... ttttttgcagGAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
EST: ATGAAGAAGCCGAACAAGTTAATGATGCATCAGATGATGGGGAAGAGGAG GAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGAEST: gi|120496371|gb|EH224538.1|EH224538
genomic: ATGAAGAAGCCGAACAAGTTAATGATGCATCAGATGATGGGGAAGAGGAGgtactgctta ... ttttttgcagGAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
EST: ATGAAGAAGCCGAACAAGTTAATGATGCATCAGATGATGGGGAAGAGGAG GAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGAEST: gi|31469791|gb|CD411819.1|CD411819
genomic: ATGAAGAAGCCGAACAAGTTAATGATGCATCAGATGATGGGGAAGAGGAGgtactgctta ... ttttttgcagGAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
EST: ATGAAGAAGCCGAACAAGTTAATGATGCATCAGATGATGGGGAAGAGGAG GAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
genomic: ATGAAGAAGCCGAACAAGTTAATGATGCATCAGATGATGGGGAAGAGGAGgtactgctta ... ttttttgcagGAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
accatgattgattgctgtgctgtggtttcaatacaattttgatgtttttttgcagGAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGATTTGAATCTGATGATGACTCTTCTCCAAGGAAAATAACCACCCATCGGC
ttttgat putative branch site (score: 4)
tgttttttt CT-rich tract
aatacaattttgatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttttatgagtgtcaaaagtatgggtggaaaataaggatgataccatgattgattgctgtgctgtggtttcaatacaattttgatgtttttttgcagGAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGATTTGAATCTGATGATGACTCTTCTCCAAGGAAAATAACCACCCATCGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - -tgagtgt
- - - - - - - - - - - - -gggtgga
- - - - - - - - - - - - - - - - - - - - - - - ccatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caataca