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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtatctctaccttagttactttaatagtataagtttcatgctggtccactatatatataagtatttttatctccacaatcatgtgactaatagaagaatcattaccaatggcagattttctttttgtgcaacaacttcaattatgtatttaaattttgttttttctccagCATGTAGGCTGGTGGTCACCAACCATCATCAGAGGTGATGATCGCGAGGCAGTTCATATTCCTAACCACAAGTTTACTGTAAATGTTGTGAGAAATCTGA

Basic information

species Glycine max
transcript GLYMA04G10060.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G10060.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv18s0001g07500.t01 (Vitis vinifera), 3'ss of exon 10
gtttgtatctctaccttagttactttaatagtataagtttcatgctggtccactatatatataagtatttttatctccacaatcatgtgactaatagaagaatcattaccaatggcagattttctttttgtgcaacaacttcaattatgtatttaaattttgttttttctccagCATGTAGGCTGGTGGTCACCAACCATCATCAGAGGTGATGATCGCGAGGCAGTTCATATTCCTAACCACAAGTTTACTGTAAATGTTGTGAGAAATCTGA
                                                     |||| ||||  |   ||   |       ||||||     ||    | ||| |||  |||   |   || ||| | |||     ||    ||| ||  || | |            || |||||||| || ||||||||||| || ||||| |||||||||||||| || |||||||| ||||| |||||||| || || || ||||||||||| ||||| |
-----------------------------------------------------tata-atatgggagattaacttcgtgtgatcatg-----aaggccacaataatt-tcaacaacc--ttgtctctctgttttttaatgataataattcatatta------------cttcagCATGTGGGTTGGTGGTCACCGACAATCATAAGAGGTGATGATCGGGAAGCAGTTCACATTCCAAACCACAAATTCACAGTGAATGTTGTGAGGAATCTTA

upper sequence: GLYMA04G10060.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv18s0001g07520.t01 (Vitis vinifera), 3'ss of exon 7
gtttgtatctctaccttagttactttaatagtataagtttcatgctggtccactatatatataagtatttttatctccacaatcatgtgactaatagaagaatcattaccaatggcagattttctttttgtgcaacaacttcaattatgtatttaaattttgttttttctccagCATGTAGGCTGGTGGTCACCAACCATCATCAGAGGTGATGATCGCGAGGCAGTTCATATTCCTAACCACAAGTTTACTGTAAATGTTGTGAGAAATCTGA
                                                      | | | | ||| |  ||  | |        || ||| |||   | ||||  |         ||||  || | ||| |||      ||   || |||| ||| | |   | ||  || |||| ||| || ||||||||||| || ||||| |||||||||||||| || ||||||||| |||| ||| |||| || || || ||||||||||| ||||| |
------------------------------------------------------aaaaaaaaaagcaacttggt-tgttttgcaatatgaataaggtaggaattgt---------cagaccttgtctttctgc------tt---ttttgtaattataatacatatta-cttcagCGTGTGGGTTGGTGGTCACCGACAATCATAAGAGGTGATGATCGTGAAGCAGTTCATGTTCCAAACAACAAATTCACAGTGAATGTTGTGAGGAATCTCA

upper sequence: GLYMA04G10060.1 (Glycine max), 3'ss of exon 11
lower sequence: EFJ18544 (Selaginella moellendorffii), 3'ss of exon 6
gtttgtatctctaccttagttactttaatagtataagtttcatgctggtccactatatatataagtatttttatctccacaatcatgtgactaatagaagaatcattaccaatggcagattttctttttgtgcaacaacttcaattatgtatttaaattttgttttttctccagCATGTAGGCTGGTGGTCACCAACCATCATCAGAGGTGATGATCGCGAGGCAGTTCATATTCCTAACCACAAGTTTACTGTAAATGTTGTGAGAAATCTGA
                                                                                                                |||  |||       |||||    |     |||  |    | |    ||    | | | |||||||| ||||||||||| || ||  | |||||||| || |||||||| || || ||||| || ||||||||||| ||  | |  |||||  | ||| | |
--------------------------------------------------------------------------------------------------------------gttggttgatacgtaaattgtgtgttatagcaaatggtaatctaatgcctttcgatgttttcagCATGTTGGCTGGTGGTCTCCTACAGTTATCAGAGGCGAAGATCGCGAAGCTGTGCATATACCCAACCACAAGTTCACGATGAGCGTTGTCCGCAATTTAA

upper sequence: GLYMA04G10060.1 (Glycine max), 3'ss of exon 11
lower sequence: EFJ29482 (Selaginella moellendorffii), 3'ss of exon 6
gtttgtatctctaccttagttactttaatagtataagtttcatgctggtccactatatatataagtatttttatctccacaatcatgtgactaatagaagaatcattaccaatggcagattttctttttgtgcaacaacttcaattatgtatttaaattttgttttttctccagCATGTAGGCTGGTGGTCACCAACCATCATCAGAGGTGATGATCGCGAGGCAGTTCATATTCCTAACCACAAGTTTACTGTAAATGTTGTGAGAAATCTGA
                                                                                                                      || || |    |  |    |    || | | || | |||||  | ||     | |||| || || |||||||| |||||  ||||  |||||||||| ||||| || || ||||||||||| |||||||| || || |  || || || || || |
--------------------------------------------------------------------------------------------------------------------gtatgttgtcaaaggaccttgaaggaaaatgt-tactaaaattcggcttg----ctagCACGTCGGTTGGTGGTCTCCAACTGTCATTCGAGGTGATGACCGCGAAGCCGTCCATATTCCTAATCACAAGTTCACCGTGAGCGTCGTTAGGAACCTTA

upper sequence: GLYMA04G10060.1 (Glycine max), 3'ss of exon 11
lower sequence: EFJ36514 (Selaginella moellendorffii), 3'ss of exon 6
gtttgtatctctaccttagttactttaatagtataagtttcatgctggtccactatatatataagtatttttatctccacaatcatgtgactaatagaagaatcattaccaatggcagattttctttttgtgcaacaacttcaattatgtatttaaattttgttttttctccagCATGTAGGCTGGTGGTCACCAACCATCATCAGAGGTGATGATCGCGAGGCAGTTCATATTCCTAACCACAAGTTTACTGTAAATGTTGTGAGAAATCTGA
                                                                                                                |||  |||       | |||    |     |||  |    | |    ||    | | | |||||||| ||||||||||| || ||  | |||||||| || |||||||| || || ||||| || ||||||||||| ||  | |  |||||  | ||| | |
--------------------------------------------------------------------------------------------------------------gttggttgatacgtaaatcgtgtgttatagcaaatggtaatctaatgcctttcgatgttttcagCATGTTGGCTGGTGGTCTCCTACAGTTATCAGAGGCGAAGATCGCGAAGCTGTGCATATACCCAACCACAAGTTCACGATGAGCGTTGTCCGCAATTTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctttttgtgcaacaacttcaattatgtatttaaattttgttttttctccagCATGTAGGCTGGTGGTCACCAACCATCATCAGAGGTGATGATCGCGAGGCAGTTCATATTCCTAACCACAAGTTTACTGTAAATGTTGTGAGAAATCTGA
                                      ttttgttttttctcc  CT-rich tract
              aacaacttcaattatg  TA-rich tract