Sequence
atgc intronic sequence ATGC exonic sequencegtgaaccagagagcctattatagtgtttctacaatatattaattgctagaaatttctacaatacgattcttggaccaaagtagataatagtatgctttagtgggattttgcaaacacctttataactgaaacatgaaactcgattacttttttgacagATTGTGTGTTCATTTCTTGTTCGTGATATGGGCATTGATTGGCGCATGGGAGCAGAATGGTTTGAGACATGTCTTTTGGATTATGATCCATGTTCTAATT
Basic information
| species | Glycine max |
| transcript | GLYMA04G07870.1 |
| intron # | 10 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G07870.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os06g45100.1 (Oryza sativa), 3'ss of exon 9
gtgaaccagagagcctattatagtgtttctacaatatattaattgctagaaatttctacaatacgattcttggaccaaagtagata-atagtatgctttagtgggattttgcaaacacctttataactgaaacatgaaactcg-attacttttttgacagATTGTGTGTTCATTTCTTGTTCGTGATATGGGCATTGATTGGCGCATGGGAGCAGAATGGTTTGAGACATGTCTTTTGGATTATGATCCATGTTCTAATT
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-----------------------------------------------------gtaaccattggcatcttatcacataagcagaaatgcagaatgactgcccaagggtacacccaaggccatctgatccaagtatccatctctcattgcttctct-acagATTGTCTGCTCATTTCTGGTCCGAGATATGGGTATTGATTGGCGAATGGGAGCTGAATGGTTTGAAACATGCCTATTGGATTATGACCCAGCTTCAAATT
upper sequence: GLYMA04G07870.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G103897_T01 (Zea mays), 3'ss of exon 9
gtgaaccagagagcctattatagtgtttctacaatatattaattgctagaaatttctacaatacgattcttggaccaaagtagataatagtatgctttagtgggattttgcaaaca-cctttataactgaaacatgaaactcgattacttttttgacagATTGTGTGTTCATTTCTTGTTCGTGATATGGGCATTGATTGGCGCATGGGAGCAGAATGGTTTGAGACATGTCTTTTGGATTATGATCCATGTTCTAATT
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----------------------------------------gtatgcttccacgtctgaccac-tgaccacataagcagaaaagacagcagagggctt-agcactgcagggcatctagtcccaattattcatctctcaatc---actgcctatctg-cagATTGTCTGCTCATTTCTTGTTCGAGATATGGGTGTTGATTGGCGAATGGGAGCCGAATGGTTCGAGACATGCTTATTGGATTATGACCCAGCTTCGAATT
upper sequence: GLYMA04G07870.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv04s0008g02670.t01 (Vitis vinifera), 3'ss of exon 10
------gtgaaccagagagcctattata-gtgtttctacaatatattaattgctagaaatttctacaatacgattcttgg---accaa---agtagataatagtatgctttagtgggattttgcaaacacctttataactgaaacatgaa-actcgattacttttttgacagATTGTGTGTTCATTTCTTGTTCGTGATATGGGCATTGATTGGCGCATGGGAGCAGAATGGTTTGAGACATGTCTTTTGGATTATGATCCATGTTCTAATT
| || | | | | | | || | | | ||| || | || | | | | | ||||| | ||| | ||| | || || | | | | ||| | | || | | | |||| | | ||| | ||| ||||||||| || || ||||| ||||| || ||||||||||| ||||| |||||||| |||||||||||||| || || | ||||| || || ||||| ||||
gtaaatctaaatttggacacgtcccttccaaatatgtaggttttctgtgttggtaccatatttttgagtcctaatcttgtttcatcaacctaacagaaattatgatattattctccaagaaatcaataatatgcatgaagaagtcttgaacaattgatatatatttatacagATTGTATGCTCTTTTCTCGTTCGAGACATGGGCATTGACTGGCGTATGGGAGCTGAATGGTTTGAGACTTGCCTCCTCGATTACGACCCTTGTTCCAATT
upper sequence: GLYMA04G07870.1 (Glycine max), 3'ss of exon 10
lower sequence: EFJ18278 (Selaginella moellendorffii), 3'ss of exon 10
gtgaaccagagagcctattatagtgtttctacaatatattaattgctagaaatttctacaatacgattcttggaccaaagtagataatagtatgctttagtgggattttgcaaacacctttataactgaaacatgaaactcgattacttttttgacagATTGTGTGTTCATTTCTTGTTCGTGATATGGGCATTGATTGGCGCATGGGAGCAGAATGGTTTGAGACATGTCTTTTGGATTATGATCCATGTTCTAATT
| ||| || || | | || || | | || | ||| |||||||| || || ||| | || ||||||||||| ||||| |||||||||||||| || |||||||| | ||||| ||||||| |||||||| ||||| |
--------------------------------------------------------------------------------------------------gtttggaaaacaaaagaacgtaatttccttaaggagtctaacaaatcaactttc---cagATTGTTTGCTCGTTTTTGGTCCGTGATATGGGGATTGACTGGCGCATGGGAGCCGAGTGGTTTGAATCCTGTCTGCTGGATTACGATCCATGCTCTAACT
upper sequence: GLYMA04G07870.1 (Glycine max), 3'ss of exon 10
lower sequence: EFJ22017 (Selaginella moellendorffii), 3'ss of exon 10
gtgaaccagagagcctattatagtgtttctacaatatattaattgctagaaatttctacaatacgattcttggaccaaagtagataatagtatgctttagtgggattttgcaaacacctttataactgaaacatgaaactcgattacttttttgacagATTGTGTGTTCATTTCTTGTTCGTGATATGGGCATTGATTGGCGCATGGGAGCAGAATGGTTTGAGACATGTCTTTTGGATTATGATCCATGTTCTAATT
| ||| || || | | || || | | || | ||| |||||||| || || ||| | || ||||||||||| |||||||||||||||||||| || |||||||| | ||||| ||||||| |||||||| ||||| |
--------------------------------------------------------------------------------------------------gtttggaaaacagaagaacataatttccttaaggagtctaacaaatcaactttc---cagATTGTTTGCTCGTTTTTAGTCCGTGATATGGGGATTGATTGGCGCATGGGAGCCGAGTGGTTTGAATCCTGTCTGCTGGATTACGATCCATGCTCTAACTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14990988|gb|BI316661.1|BI316661EST: ATATGAAAGAATTGTCAACTACAGGATTTATGTCAAATCGAGGACGGCAG ATTGTGTGTTCATTTCTTGTTCGTGATATGGGCATTGATTGGCGCATGGGA
genomic: ATATGAAAGAATTATCAACTACAGGATTTATGTCAAATCGAGGACGGCAGgtgaaccaga ... tttttgacagATTGTGTGTTCATTTCTTGTTCGTGATATGGGCATTGATTGGCGCATGGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gattttgcaaacacctttataactgaaacatgaaactcgattacttttttgacagATTGTGTGTTCATTTCTTGTTCGTGATATGGGCATTGATTGGCGCATGGGAGCAGAATGGTTTGAGACATGTCTTTTGGATTATGATCCATGTTCTAATT
ttataac putative branch site (score: 2)
ttactttttt putative PPT
attactttttt TA-rich tract
