1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...catgattgtaaatttctgtccctgattatggtgattgtaaatttatcctacgaagagtaagaaataggttcctaacatggttatctgaatgcactttaagGTTTCAAAAAACCAGATTGTGAGAAAGAGAAAGCAGCCTGGATCCTCATCAGGTCCTGCCAATAGTTCAGGAACGGCAAATACAACAGGTCCATCACCAA
species | Glycine max |
transcript | GLYMA04G07460.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGAGGAAATGACCAG GTTTCAAAAAACCAGATTGTGAGAAAGAGAAAGCAGCCTGGATCCTCATCAEST: gi|207736073|gb|GD713436.1|GD713436
genomic: AGAGGAAATGACCAGgtcagtcctt ... gcactttaagGTTTCAAAAAACCAGATTGTGAGAAAGAGAAAGCAGCCTGGATCCTCATCA
EST: GTGTCACTGTGGATGGTAGCATGTCAAACTCATTTAGAGGAAATGACCAG GTTTCAAAAA-CCAGATTGTGAGAAAGAGAAAGCAGCCTGGATCCTCATCAEST: gi|208055941|gb|GD852038.1|GD852038
genomic: GTGTCACTGTGGATGGTAGCATGTCAAACTCATTTAGAGGAAATGACCAGgtcagtcctt ... gcactttaagGTTTCAAAAAACCAGATTGTGAGAAAGAGAAAGCAGCCTGGATCCTCATCA
EST: TTTAGAGGAAATGACCAG GTTTCAAAAAACCAGATTGTGAGAAAGAGAAAGCAGCCTGGATCCTCATCAEST: gi|14259657|gb|BG882565.1|BG882565
genomic: TTTAGAGGAAATGACCAGgtcagtcctt ... gcactttaagGTTTCAAAAAACCAGATTGTGAGAAAGAGAAAGCAGCCTGGATCCTCATCA
EST: GTGTCACTGTGGATGGTAGCATGTCAAACTCATTTAGAGGAAATGACCAG GTTTCAAAAAACCAGATTGTGAGAAAGAGAAAGCAGCCTGGATCCTCATCAEST: gi|208310462|gb|GE107712.1|GE107712
genomic: GTGTCACTGTGGATGGTAGCATGTCAAACTCATTTAGAGGAAATGACCAGgtcagtcctt ... gcactttaagGTTTCAAAAAACCAGATTGTGAGAAAGAGAAAGCAGCCTGGATCCTCATCA
EST: TTTAGAGGTAAATTGACCAG GTTTCAAAAAACCAGATTGTGAGAAAGAGAAAGCAGCCTGGATCCTCATC
genomic: TTTAGAGG-AAA-TGACCAGgtcagtcctt ... gcactttaagGTTTCAAAAAACCAGATTGTGAGAAAGAGAAAGCAGCCTGGATCCTCATC
tcctacgaagagtaagaaataggttcctaacatggttatctgaatgcactttaagGTTTCAAAAAACCAGATTGTGAGAAAGAGAAAGCAGCCTGGATCCTCATCAGGTCCTGCCAATAGTTCAGGAACGGCAAATACAACAGGTCCATCACCAA
tcctaac putative branch site (score: 1)
taagaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgattgtaaatttctgtccctgattatggtgattgtaaatttatcctacgaagagtaagaaataggttcctaacatggttatctgaatgcactttaagGTTTCAAAAAACCAGATTGTGAGAAAGAGAAAGCAGCCTGGATCCTCATCAGGTCCTGCCAATAGTTCAGGAACGGCAAATACAACAGGTCCATCACCAA
catgatt
- - - - - - - - tgtccct
- - - - - - - - - - - - - tatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctaaca