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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcaatttttttatgagtagtctttgcccccactttgtagGTTGTTTCTTGTCCATGTGCATTGGGTCTTGCTACGCCCACAGCAATCTTAGTTGGCACCTCACTTG

Basic information

species Glycine max
transcript GLYMA04G05900.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G05900.2 (Glycine max), 3'ss of exon 10
lower sequence: Vv04s0008g01960.t01 (Vitis vinifera), 3'ss of exon 10
--------------------------------------------------gtgagtcaatttttttatgagtagtctttgcccc-----cactttgt-agGTTGTTTCTTGTCCATGTGCATTGGGTCTTGCTACGCCCACAGCAATCTTAGTTGGCACCTCACTTG
                                                   ||    | |  || ||  | ||  ||||  |       |  ||||| |||| || || |||||||| ||| |||| ||||| || || || |||||||||||||||||||| ||||
tgcagaaattgacattgatatgctagggaatgaaaatgaggcatgcttagatgcaaaagtagttgtaaaattaaactttttcttttttgctttttgtcagGTGGTCTCCTGTCCATGCGCACTGGGGCTTGCCACACCTACTGCAATCTTAGTTGGCACCTCTCTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgagtcaatttttttatgagtagtctttgcccccactttgtagGTTGTTTCTTGTCCATGTGCATTGGGTCTTGCTACGCCCACAGCAATCTTAGTTGGCACCTCACTTG
                                             tctttgcccccacttt  CT-rich tract
                  aatttttttatgagta  TA-rich tract