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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgtgcaatattgatgttttaaccattttcattttttattgttaatctgatggtcaatttattctagtcaatgaacctaaccttcactttgtggcagGATCTTGATTTGCATGACATTCTGTTCATTGATGCTGAGCTTGGGAAGACTTTACAAGAGTTCAATGCCCTTGTTTGTCGGAAACATTATATAGAATCTA

Basic information

species Glycine max
transcript GLYMA04G00530.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G00530.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 10
-----------gtatgttgtgcaatattgatgttttaaccattttcattttttat-tgttaatctgatggtcaatttattctagtcaatgaacctaaccttcactttgtggcagGATCTTGATTTGCATGACATTCTGTTCATTGATGCTGAGCTTGGGAAGACTTTACAAGAGTTCAATGCCCTTGTTTGTCGGAAACATTATATAGAATCTA
            |  ||| |  | | |  |  ||||| |    |   |||   || | |   | | ||||    || ||| | |||||     | ||  |    |   | ||||||||| |||||||||||||| || |   |||||||||| |||||||||| ||| |||||  |  | | |||||||||||||||||| ||| | ||   | 
gtaatacaaatttgagttctatattgtcaa-attttacctgcctctgtttaacatatttccctgtcatgggaggttcatt-tggtcaaaatttcaaatttatgatcccttgcagGATCTGGATTTGCATGACATCCTATCATTTGATGCTGAACTTGGGAAGATTTTGCAAGAACTGCAAGTCCTTGTTTGTCGGAAACAGTATCTGGATGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193619025|gb|FK569831.1|FK569831
EST:     TACTGGACCTGCCATTGTCAGTGGCATTTTATAAGCTTGTTCTCTGCCAA                         GATCTTGATTTGCATGACATTCTGTTCATTGATGCTGAGCTTGGGAAGACT
genomic: TACTGGACCTGCCATTGTCAGTGGCATTTTATAAGCTTGTTCTCTGCCAAgtatgttgtg ... tttgtggcagGATCTTGATTTGCATGACATTCTGTTCATTGATGCTGAGCTTGGGAAGACT
EST: gi|58021812|gb|CX708553.1|CX708553
EST:     TACTGGACCTGCCATTGTCAGTGGCATTTTATAAGCTTGTTCTCTGCCAA                         GATCTTGATTTGCATGACATTCTGTTCATTGATGCTGAGCTTGGGAAGACT
genomic: TACTGGACCTGCCATTGTCAGTGGCATTTTATAAGCTTGTTCTCTGCCAAgtatgttgtg ... tttgtggcagGATCTTGATTTGCATGACATTCTGTTCATTGATGCTGAGCTTGGGAAGACT
EST: gi|193561747|gb|FK521652.1|FK521652
EST:     TACTGGACCTGCCATTGTCAGTGGCATTTTATAAGCTTGTTCTCTGCCAA                         GATCTTGATTTGCATGACATTCTGTTCATTGATGCTGAGCTTGGGAAGACT
genomic: TACTGGACCTGCCATTGTCAGTGGCATTTTATAAGCTTGTTCTCTGCCAAgtatgttgtg ... tttgtggcagGATCTTGATTTGCATGACATTCTGTTCATTGATGCTGAGCTTGGGAAGACT
EST: gi|193656605|gb|FK602405.1|FK602405
EST:     TACTGGACCTGCCATTGTCAGTGGCATTTTATAAGCTTGTTCTCTGCCAA                         GATCTTGATTTGCATGACATTCTGTTCATTGATGCTGAGCTTGGGAAGACT
genomic: TACTGGACCTGCCATTGTCAGTGGCATTTTATAAGCTTGTTCTCTGCCAAgtatgttgtg ... tttgtggcagGATCTTGATTTGCATGACATTCTGTTCATTGATGCTGAGCTTGGGAAGACT
EST: gi|193719673|gb|FK652255.1|FK652255
EST:     TACTGGACCTGCCATTGTCAGTGGCATTTTATAAGCTTGTTCTCTGCCAA                         GATCTTGATTTGCATGACATTCTGTTCATTGATGCTGAGCTTGGGAAGACT
genomic: TACTGGACCTGCCATTGTCAGTGGCATTTTATAAGCTTGTTCTCTGCCAAgtatgttgtg ... tttgtggcagGATCTTGATTTGCATGACATTCTGTTCATTGATGCTGAGCTTGGGAAGACT
EST: gi|15813389|gb|BI785664.1|BI785664
EST:     TACTGGACCTGCCATTGTCAGTGGCATTTTATAAGCTTGTTCTCTGCCAA                         GATCTTGATTTGCATGACATTCTGTTCATTGATGCTGAGCTTGGGAAGACT
genomic: TACTGGACCTGCCATTGTCAGTGGCATTTTATAAGCTTGTTCTCTGCCAAgtatgttgtg ... tttgtggcagGATCTTGATTTGCATGACATTCTGTTCATTGATGCTGAGCTTGGGAAGACT
EST: gi|5509212|gb|AI855770.1|AI855770
EST:     TACTGGACCTGCCATTGTCAGTGGCATTTTATAAGCTTGTTCTCTGCCAA                         GATCTTGATTTGCATGACATTCTGTTCATTGATGCTGAGCTTGGGAAGACT
genomic: TACTGGACCTGCCATTGTCAGTGGCATTTTATAAGCTTGTTCTCTGCCAAgtatgttgtg ... tttgtggcagGATCTTGATTTGCATGACATTCTGTTCATTGATGCTGAGCTTGGGAAGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatctgatggtcaatttattctagtcaatgaacctaaccttcactttgtggcagGATCTTGATTTGCATGACATTCTGTTCATTGATGCTGAGCTTGGGAAGACTTTACAAGAGTTCAATGCCCTTGTTTGTCGGAAACATTATATAGAATCTA
                                acctaac  putative branch site (score: 2)
                                      ccttcacttt  CT-rich tract
             aatttattcta  TA-rich tract