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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttccagttatccatgcatgctttatttgttgcctgctgcatatgtccaggctgtattatttaattttaaacttctgttaataagacagctgtcataaatataacctcttctgtccattttttatagGCTGGATTACCTGATGATCTTTCTGAGAACCCCTTGGACAATGCTGAACTTCTTCAGGATCAATTAGATTGCTTCCCATACCTATGTAGATTTCAG

Basic information

species Glycine max
transcript GLYMA04G00430.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G00430.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv13s0067g01920.t01 (Vitis vinifera), 3'ss of exon 12
gtatttccagttatccatgcatgctttatttgttgcctgctgcatatgtccaggctgtattatttaattttaaacttctgttaataagacagctgtcataaatataacctcttctgtccattttttatagGCTGGATTACCTGATGATCTTTCTGAGAACCCCTTGGACAATGCTGAACTTCTTCAGGATCAATTAGATTGCTTCCCATACCTATGTAGATTTCAG
                                  |  |  ||   |   |||   | | || |     |   |  ||||| |   |    |    | | || ||| |  | |||||      |||||||||||||||| || ||||||||||||||||| ||  | || |  | ||||||||||||||||||  |||| ||||| || ||||| || ||||| |||
----------------------------------gtatattg---acaaccaattttttttttggcgctggcatattctgatttcactttaaaattgaaaattatta--ttttctgat--gcttttatagGCTGGATTTCCGGATGATCTTTCTGAGAATCCACTAGATAGCGTTGAACTTCTTCAGGATCAGCTAGAATGCTTTCCTTACCTTTGCAGATTCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgttaataagacagctgtcataaatataacctcttctgtccattttttatagGCTGGATTACCTGATGATCTTTCTGAGAACCCCTTGGACAATGCTGAACTTCTTCAGGATCAATTAGATTGCTTCCCATACCTATGTAGATTTCAG
                          atataac  putative branch site (score: 3)
                                cctcttctgtccattt  CT-rich tract
                  tgtcataaatataa  TA-rich tract