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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaacaattgttctattagcaatgatgattattgatttcatctttatggattgttaagcacttaaaatttgtccagCTTCAAATGGAAATCCTCACCATTCAGATTCGTTGCATTACATTGATGCATATGGCCGGTTAAATTCATACCAAAAG

Basic information

species Glycine max
transcript GLYMA03G40220.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40220.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv14s0030g00570.t01 (Vitis vinifera), 3'ss of exon 11
gtatgtaacaattgttctattagcaatgatgattattgatttc------atctttatggattgttaa--gcacttaaaatttgtccagCTTCAAATGGAAATCCTCACCATTCAGATTCGTTGCATTACATTGATGCATATGGCCGGTTAAATTCATACCAAAAG
|||  ||    |     |   || | || |   | ||   ||       || ||| ||  |  | |   ||  ||  | |||||||||||||||||||||||||||    | ||||||| ||||| ||||||||| | | |||| |||| ||| | |||||| ||
gtaaatactcttcagctttgcaggattgctatctttttgcttttttgtaatttttctgtttcatgagcggccattttattttgtccagCTTCAAATGGAAATCCTCGAACTCCAGATTCTTTGCACTACATTGATCCTTCTGGCAGGTTCAATGCTTACCAACAG

upper sequence: GLYMA03G40220.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv14s0030g00600.t01 (Vitis vinifera), 3'ss of exon 8
gtatgtaacaattgttctattagcaatgatgattatt---gatttcat--ctttatggattgttaagcac---ttaaaatttgtccagCTTCAAATGGAAATCCTCACCATTCAGATTCGTTGCATTACATTGATGCATATGGCCGGTTAAATTCATACCAAAAG
|||  ||    |     |   || | || |   | ||   | ||| ||   |||   | ||  | |||     ||  | |||||||||||||||||||||||||||    | ||||||| ||||| ||||||||| | | ||||||||| ||| | |||||| ||
gtaaatactcttcagctttgcaggattgctatctttttgcgtttttataatttttctgtttcatgagcggccgttttattttgtccagCTTCAAATGGAAATCCTCGAACTCCAGATTCTTTGCACTACATTGATCCTTCTGGCCGGTTCAATGCTTACCAACAG

upper sequence: GLYMA03G40220.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv14s0030g00550.t01 (Vitis vinifera), 3'ss of exon 7
gtatgtaacaattgttctattagcaatgatgattatt---gatttcat--ctttatggattgttaagcacttaa---aatttgtccagCTTCAAATGGAAATCCTCACCATTCAGATTCGTTGCATTACATTGATGCATATGGCCGGTTAAATTCATACCAAAAG
|||  ||    |     |   || | || |   | ||   | ||| ||   |||   | ||  | |||    |    | |||||||||||||||||||||||||||    | ||||||| ||||| ||||||||| | | |||| |||| ||| | |||||| ||
gtaaatactcttcagctttgcaggattgctatctttttgcgtttttataatttttctgtttcatgagcggccattttattttgtccagCTTCAAATGGAAATCCTCGAACTCCAGATTCTTTGCACTACATTGATCCTTCTGGCAGGTTCAATGCTTACCAACAG

upper sequence: GLYMA03G40220.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv12s0121g00080.t01 (Vitis vinifera), 3'ss of exon 10
gtatgtaacaattgttctattagcaatgatgattatt---gatttcat--ctttatggattgttaagcac---ttaaaatttgtccagCTTCAAATGGAAATCCTCACCATTCAGATTCGTTGCATTACATTGATGCATATGGCCGGTTAAATTCATACCAAAAG
|||  ||    |     |   || | || |   | ||   | ||| ||   |||   | ||  | |||     ||  | |||||||||||||||||||||||||||   || ||||||| ||||| ||||||||| | | ||||||||| ||| | |||||| ||
gtaaatactcttcagctttgcaggattgctatctttttgcgtttttataatttttctgtttcatgagcggccgttttattttgtccagCTTCAAATGGAAATCCTCGAAATCCAGATTCTTTGCACTACATTGATCCTTCTGGCCGGTTCAATGCTTACCAACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatgattattgatttcatctttatggattgttaagcacttaaaatttgtccagCTTCAAATGGAAATCCTCACCATTCAGATTCGTTGCATTACATTGATGCATATGGCCGGTTAAATTCATACCAAAAG
        tattgat  putative branch site (score: 3)
                                              tttgtcc  putative PPT
      attattgatttcat  TA-rich tract