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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaacaattgttcttctattagcaacggtgattatgaatttcatctttcttgtttgttaacctcttcaaaaaatttccagCTTCAAATGGAAATCCTCAGCATTCAGATTCTTTGCATTATATTGATGCATATGGTCGGTTAAATTCATACCAAAAG

Basic information

species Glycine max
transcript GLYMA03G40210.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40210.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv12s0121g00080.t01 (Vitis vinifera), 3'ss of exon 10
gtaagtaacaattgttcttctattagcaacggtgattatgaatttcat--ctttcttgtttgttaacc--tcttcaaaaaatttccagCTTCAAATGGAAATCCTCAGCATTCAGATTCTTTGCATTATATTGATGCATATGGTCGGTTAAATTCATACCAAAAG
|||| ||    |     ||  |  |          ||     ||| ||   |||  |||||  | | |   | |   |   | |||||||||||||||||||||||   || ||||||||||||| || |||||| | | ||| ||||| ||| | |||||| ||
gtaaatactcttcagctttgcaggattgctatctttttgcgtttttataatttttctgtttcatgagcggccgttttattttgtccagCTTCAAATGGAAATCCTCGAAATCCAGATTCTTTGCACTACATTGATCCTTCTGGCCGGTTCAATGCTTACCAACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggtgattatgaatttcatctttcttgtttgttaacctcttcaaaaaatttccagCTTCAAATGGAAATCCTCAGCATTCAGATTCTTTGCATTATATTGATGCATATGGTCGGTTAAATTCATACCAAAAG
                             tgttaac  putative branch site (score: 2)
                                                tttcc  putative PPT
     attatgaatttcat  TA-rich tract