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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtctaagatgcatttagttcatctatcatgtgtcacttaaaacaccatttgtcatcccaataggctgtttgtcatatggtactgttttcagtaaaaagcaaagtactaaatgctaatgtcttcagtcttgtttaggctatcatcataatgaatgttgttaaaaaaaattgcagATTAAGGAAGCAATTTTCAGAACTCTAATTAGGAATGGCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGAAAAAAG

Basic information

species Glycine max
transcript GLYMA03G40000.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40000.2 (Glycine max), 3'ss of exon 10
lower sequence: AT3G05190.1 (Arabidopsis thaliana), 3'ss of exon 10
gtgagtctaagatgcatttagttcatctatcatgtgtcacttaaaacaccatttgtcatcccaataggctgtttgtcatatggtactgttttcagtaaaaagcaaagtacta-aatgctaa--tgtcttcagtcttgtttaggctatcatcataatgaatgttgttaaaaaaaattgcagATTAAGGAAGCAATTTTCAGAACTCTAATTAGGAATGGCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGAAAAAAG
                                                                                              ||||  | |  |  |    | |||||   | | ||| ||       | | || ||  |||     |  |  |   | ||  ||||| | || |||||||| ||||||||||| || |  ||||| |||||||||||| |||| ||| || | |||||||| ||||| ||||||
----------------------------------------------------------------------------------------------gtaagcatctgatgatcgtagtgctatgttttgttctgttaaaacgacgttaccacgatagctttttattgtggcataacatgcagGTAAAAGAAGCAATCTTCAGAACTCTTATAACCAATGGTATGTTTGACAATACACATATCAGGTTGTCTCTAACTCGAGGCAAAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24205448|gb|BU964701.1|BU964701
EST:     TTGATTCAGCAAAAGCTTTAGCTTTTGAAAATGTTCCTACTCAAGATGAG                         ATTAAGGAAGCAATTTTCAGAACTCTAATTAGGAATGGCATGTTTGACAAT
genomic: TTGATTCAGCAAAAGCTTTAGCTTTTGAAAATGTTCCTACTCAAGATGAGgtgagtctaa ... aaaattgcagATTAAGGAAGCAATTTTCAGAACTCTAATTAGGAATGGCATGTTTGACAAT
EST: gi|17021927|gb|BM092961.1|BM092961
EST:     TTGATTCAGCAAAAGCTTTAGCTTTTGAAAATGTTCCTACTCAAGATGAG                         ATTAAGGAAGCAATTTTCAGAACTCTAATTAGGAATGGCATGTTTGACAAT
genomic: TTGATTCAGCAAAAGCTTTAGCTTTTGAAAATGTTCCTACTCAAGATGAGgtgagtctaa ... aaaattgcagATTAAGGAAGCAATTTTCAGAACTCTAATTAGGAATGGCATGTTTGACAAT
EST: gi|6724770|gb|AW309169.1|AW309169
EST:     CTACTCAAGATGAG                         ATTAAGGAAGCAATTTTCAGAACTCTAATTAGGAATGGCATGTTTGACAAT
genomic: CTACTCAAGATGAGgtgagtctaa ... aaaattgcagATTAAGGAAGCAATTTTCAGAACTCTAATTAGGAATGGCATGTTTGACAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcagtcttgtttaggctatcatcataatgaatgttgttaaaaaaaattgcagATTAAGGAAGCAATTTTCAGAACTCTAATTAGGAATGGCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGAAAAAAG
                       atcataatgaatgttg  TA-rich tract