1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...agcaatcaattagcacaagttaaaaagctttcatttttcacatagtaaatttggattactcgtccggtccatctttgaatttttctgtcttatgatgcagTCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTATCTACCTTTGCTTGATCTTCCTGTGATAGAAGAGTCATTTCTTTCAGTT
species | Glycine max |
transcript | GLYMA03G39130.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG TCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTAEST: gi|6845919|gb|AW348209.1|AW348209
genomic: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaattcatc ... tatgatgcagTCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG TCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTAEST: gi|208248584|gb|GE047623.1|GE047623
genomic: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaattcatc ... tatgatgcagTCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: CTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG TCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTAEST: gi|192297310|gb|FG992404.1|FG992404
genomic: CTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaattcatc ... tatgatgcagTCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG TCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTAEST: gi|193366228|gb|FK333645.1|FK333645
genomic: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaattcatc ... tatgatgcagTCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG TCAATCAGCCCAGACAAAAAGCAGATGAEST: gi|308098193|gb|HO761364.1|HO761364
genomic: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaattcatc ... tatgatgcagTCAATCAGCCCAG-CAAAA-GCAGATGA
EST: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG TCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTAEST: gi|17020695|gb|BM091729.1|BM091729
genomic: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaattcatc ... tatgatgcagTCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG TCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTAEST: gi|17021210|gb|BM092244.1|BM092244
genomic: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaattcatc ... tatgatgcagTCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG TCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTAEST: gi|58023280|gb|CX710021.1|CX710021
genomic: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaattcatc ... tatgatgcagTCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG TCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
genomic: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaattcatc ... tatgatgcagTCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
taaatttggattactcgtccggtccatctttgaatttttctgtcttatgatgcagTCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTATCTACCTTTGCTTGATCTTCCTGTGATAGAAGAGTCATTTCTTTCAGTT
tttttctgtcttat CT-rich tract
atctttgaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcaatcaattagcacaagttaaaaagctttcatttttcacatagtaaatttggattactcgtccggtccatctttgaatttttctgtcttatgatgcagTCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTATCTACCTTTGCTTGATCTTCCTGTGATAGAAGAGTCATTTCTTTCAGTT
-gcaatca
- - - - - - - - - - - - - gctttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcgtcc