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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcacaaataaatttaatagcctttcgtgttttatactttattcaccatagtgaaaatactaatatatctagtaacttgtcttgtttagcgcaccacactgataaatttgttgatttggtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCT

Basic information

species Glycine max
transcript GLYMA03G38850.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G38850.2 (Glycine max), 3'ss of exon 10
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 10
gtatcacaaataaatttaatagcctttcgtgttttatactttattcaccatag-tgaaaatactaatatatctagtaacttgtcttgtttagcgcaccacactgataaatttgttgatttggtcctt-ctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCT
                                              || | |  | ||| ||  |||  || || ||  |||| |   | | |  | || |    |  |||| || || |  |  || | |||| || || || |||||||||||||||||||||||| |||| ||||||||||| || ||||| |||||  | |||||||| |||
--------------------------------------------gtactagaaatcaaagta--aatgcatata-tagtttgtttctctcatcttatcataaatttttatttattcatatccttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT

upper sequence: GLYMA03G38850.2 (Glycine max), 3'ss of exon 10
lower sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 8
gtatcacaaataaatttaatagcctttcgtgttttatactttattcaccatagtgaaaatactaatatatctagtaacttgtcttgtttagcgcaccacactgataaatttgttgatttggtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCT
                |   ||    ||| |  |    |||| |  | | |  |   || | |    |   | |  | ||| ||          ||||   || ||     |||| | | ||  |   || | || ||||||||||||||||||||||| || |||||||| ||||| ||||| || ||||| || ||  ||||||||| ||||
---------------atgccagtagatcgaggctc---ctttgt--atcgtgattgcaagaatggggttctttgggatttgcct---------aaccaacgtggtacggg-gttggtgtcgtgatggcagGTTTTCCACAAGCGCATGCCTCCAGAAGCAGTAGATCTGGTTTCAAGGCTACTTCAGTACTCTCCGAATCTGCGGTGCAATGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296807|gb|FG993105.1|FG993105
EST:     ACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAG                         ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTGGTATCAAGACTA
genomic: ACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTA
EST: gi|15285595|gb|BI469486.1|BI469486
EST:     ACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAG                         ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTA
genomic: ACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTA
EST: gi|21888144|gb|BQ741366.1|BQ741366
EST:     ACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAG                         ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTA
genomic: ACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTA
EST: gi|19054267|gb|BM732934.1|BM732934
EST:     ACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAG                         ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTA
genomic: ACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTA
EST: gi|22931093|gb|BU548232.1|BU548232
EST:     ACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAG                         ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTA
genomic: ACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTA
EST: gi|21994002|gb|BQ785530.1|BQ785530
EST:     GCGCATCCATGGCACAAG                         ATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTA
genomic: GCGCATCCATGGCACAAGgtatcacaaa ... gtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttgtcttgtttagcgcaccacactgataaatttgttgatttggtccttctagATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCT
                                              tccttct  CT-rich tract
                            ataaatttgttgattt  TA-rich tract