1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgtgttatcgttagttgtattctgaatctgcttcaacttgttaatttgaaagtttatgagttggtttcctcatcactctacagGAATCAAAGCTTAAAGCAGCGCAAATGCACATATATGTCAGAAGAGGTGGTCCAAACTACCAGACTGGTTTGGCAAAGATGCGTGCATTGGGGGAGGAGT
species | Glycine max |
transcript | GLYMA03G38810.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTGATGTTGCTGCCACATTCAACGGGATTATTCGAGCCCTGAAAGAGAAG GAATCAAAGCTTAAAGCAGCGCAAATGCACATATATGTCAGAAGAGGTGGTEST: gi|6228216|gb|AW156815.1|AW156815
genomic: CTGATGTTGCTGCCACATTCAACGGGATTATTCGAGCCCTGAAAGAGAAGgtgtgttatc ... cactctacagGAATCAAAGCTTAAAGCAGCGCAAATGCACATATATGTCAGAAGAGGTGGT
EST: CTGATGTTGCTGCCACATTCAACGGGATTATTCGAGCCCTGAAAGAGAAG GAATCAAAGCTTAAAGCAGCGCAAATGCACATATATGTCAGAAGAGGTGGTEST: gi|5510282|gb|AI856724.1|AI856724
genomic: CTGATGTTGCTGCCACATTCAACGGGATTATTCGAGCCCTGAAAGAGAAGgtgtgttatc ... cactctacagGAATCAAAGCTTAAAGCAGCGCAAATGCACATATATGTCAGAAGAGGTGGT
EST: CTGATGTTGCTGCCACATTTATTTGGATTATTCGAGCCCTGAAAGAGAAG GAATCAAAGCTTAAAGCAGCGCAAATGCACATATATGTCAGAAGAGGTGGTEST: gi|151402134|gb|EV271947.1|EV271947
genomic: CTGATGTTGCTGCCACATTCAACGGGATTATTCGAGCCCTGAAAGAGAAGgtgtgttatc ... cactctacagGAATCAAAGCTTAAAGCAGCGCAAATGCACATATATGTCAGAAGAGGTGGT
EST: CTGATGTTGCTGCCACATTCAACGGGATTATTCGAGCCCTGAAAGAGAAG GAATCAAAGCTTAAAGCAGCGCAA-TGCACATATATGTCAGAAGAG-TGGTEST: gi|58021506|gb|CX708247.1|CX708247
genomic: CTGATGTTGCTGCCACATTCAACGGGATTATTCGAGCCCTGAAAGAGAAGgtgtgttatc ... cactctacagGAATCAAAGCTTAAAGCAGCGCAAATGCACATATATGTCAGAAGAGGTGGT
EST: CTGATGTTGCTGCCACATTCAACGGGATTATTCGAGCCCTGAAAGAGAAG GAATCAAAGCTTAAAGCAGCGCAAATGCACATATATGTCAGAAGAGGTGGTEST: gi|58018692|gb|CX705434.1|CX705434
genomic: CTGATGTTGCTGCCACATTCAACGGGATTATTCGAGCCCTGAAAGAGAAGgtgtgttatc ... cactctacagGAATCAAAGCTTAAAGCAGCGCAAATGCACATATATGTCAGAAGAGGTGGT
EST: CTGATGTTGCTGCCACATTCAACGGGATTATTCGAGCCCTGAAAGAGAAG GAATCAAAGCTTAAAGCAGCGCAAATGCACATATATGTCAGAAGAGGTGGTEST: gi|20813974|gb|BQ298452.1|BQ298452
genomic: CTGATGTTGCTGCCACATTCAACGGGATTATTCGAGCCCTGAAAGAGAAGgtgtgttatc ... cactctacagGAATCAAAGCTTAAAGCAGCGCAAATGCACATATATGTCAGAAGAGGTGGT
EST: GCCCTGAAAGAGAAG GAATCAAAGCTTAAAGCAGCGCAAATGCACATATATGTCAGAAGAGGTGGTEST: gi|5509817|gb|AI856375.1|AI856375
genomic: GCCCTGAAAGAGAAGgtgtgttatc ... cactctacagGAATCAAAGCTTAAAGCAGCGCAAATGCACATATATGTCAGAAGAGGTGGT
EST: CCTGAAAGAGAAG GAATCAAAGCTTAAAGCAGCGCAAATGCACATATATGTCAGAAGAGGTGGTEST: gi|120495429|gb|EH223596.1|EH223596
genomic: CCTGAAAGAGAAGgtgtgttatc ... cactctacagGAATCAAAGCTTAAAGCAGCGCAAATGCACATATATGTCAGAAGAGGTGGT
EST: CTGATGTTGCTGCCACATTCAACGGGATTATTCGAGCCCTGAAAGAGAAG GAATCAAAGCTTAAAGCAGCGCAAATGCACATATATGTCAGAAGAGGTGGT
genomic: CTGATGTTGCTGCCACATTCAACGGGATTATTCGAGCCCTGAAAGAGAAGgtgtgttatc ... cactctacagGAATCAAAGCTTAAAGCAGCGCAAATGCACATATATGTCAGAAGAGGTGGT
tgcttcaacttgttaatttgaaagtttatgagttggtttcctcatcactctacagGAATCAAAGCTTAAAGCAGCGCAAATGCACATATATGTCAGAAGAGGTGGTCCAAACTACCAGACTGGTTTGGCAAAGATGCGTGCATTGGGGGAGGAGT
tgttaat putative branch site (score: 3)
tttcctcatcactct putative PPT
ttaatttgaaagttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgttatcgttagttgtattctgaatctgcttcaacttgttaatttgaaagtttatgagttggtttcctcatcactctacagGAATCAAAGCTTAAAGCAGCGCAAATGCACATATATGTCAGAAGAGGTGGTCCAAACTACCAGACTGGTTTGGCAAAGATGCGTGCATTGGGGGAGGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG