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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcattaactttgtcctagtgttgcatcaattctcgtatttgtcattttgcttccacactgttagtttttcagtgaacatcaaataaatctctttggattttgcatagGTTCGTGCTGTTCGACGTGATAATGGAGCAAAGATAGACATTGCTAGTGCTGATTTGGTTGTGGAAATAAAAAAGTTGCTTGATACTATTCAACAGAACC

Basic information

species Glycine max
transcript GLYMA03G38340.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404914|gb|EV274728.1|EV274728
EST:     GTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAG                         GTTCGTGCTGTTCGACGTGATAATGGAGCAAAGATAGACATTGCTAGTGCT
genomic: GTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcattaact ... ttttgcatagGTTCGTGCTGTTCGACGTGATAATGGAGCAAAGATAGACATTGCTAGTGCT
EST: gi|193711552|gb|FK643017.1|FK643017
EST:     GTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAG                         GTTCGTGCTGTTCGACGTGATAATGGAGCAAAGATAGACATTGCTAGTGCT
genomic: GTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcattaact ... ttttgcatagGTTCGTGCTGTTCGACGTGATAATGGAGCAAAGATAGACATTGCTAGTGCT
EST: gi|193486463|gb|FK449988.1|FK449988
EST:     GTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAG                         GTTCGTGCTGTTCGACGTGATAATGGAGCAAAGATAGACATTGCTAGTGCT
genomic: GTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcattaact ... ttttgcatagGTTCGTGCTGTTCGACGTGATAATGGAGCAAAGATAGACATTGCTAGTGCT
EST: gi|192304984|gb|FG996116.1|FG996116
EST:     GTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAG                         GTTCGTGCTGTTCGACGTGATAATGGAGCAAAGATAGACATTGCTAGTGCT
genomic: GTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGgtcattaact ... ttttgcatagGTTCGTGCTGTTCGACGTGATAATGGAGCAAAGATAGACATTGCTAGTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccacactgttagtttttcagtgaacatcaaataaatctctttggattttgcatagGTTCGTGCTGTTCGACGTGATAATGGAGCAAAGATAGACATTGCTAGTGCTGATTTGGTTGTGGAAATAAAAAAGTTGCTTGATACTATTCAACAGAACC
                      aacatcaaataaat  TA-rich tract