1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...atgcaaaaaaatctacttagttgatgctgacttacagctttttagtgtgggttgatatgcaccttttttttgtattaactcgaaccttaataactcacagTATCATACCATGCGGAATGTCCTCTATATGGCCATGACTGAATTCAGAAAG
species | Glycine max |
transcript | GLYMA03G35830.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGTCATGGTCAGCCAATGCAGTTGAG-CAGCATGCTCTCACTTGTCACAG TATCATACCATGCGGAATGTCCTCEST: gi|192314239|gb|FK006977.1|FK006977
genomic: AGTCATGGTCAGCCAATGCAGTTGAGGCAGCATGCTCTCACTTGTCACAGgttagcttta ... taactcacagTATCATACCATGCGGAATGTCCTC
EST: AGTCATGGTCAGCCAATGCAGTTGAG-CAGCATGCTCTCACTTGTCACAG TATCATACCATGCGGA-TGTC-TCTATATGGCCATGACTGAATTCAGAAAGEST: gi|151395111|gb|EV264982.1|EV264982
genomic: AGTCATGGTCAGCCAATGCAGTTGAGGCAGCATGCTCTCACTTGTCACAGgttagcttta ... taactcacagTATCATACCATGCGGAATGTCCTCTATATGGCCATGACTGAATTCAGAAAG
EST: AGTCATGGTCAGCCAATGCAGTTGAGGCAGCATGCTCTCACTTGTCACAG TATCATACCATGCGGAATGTCCTCTATATGGCCATGACTGAATTCAGAAAG
genomic: AGTCATGGTCAGCCAATGCAGTTGAGGCAGCATGCTCTCACTTGTCACAGgttagcttta ... taactcacagTATCATACCATGCGGAATGTCCTCTATATGGCCATGACTGAATTCAGAAAG
tgtgggttgatatgcaccttttttttgtattaactcgaaccttaataactcacagTATCATACCATGCGGAATGTCCTCTATATGGCCATGACTGAATTCAGAAAG
taataac putative branch site (score: 1)
ttttttttgtattaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcaaaaaaatctacttagttgatgctgacttacagctttttagtgtgggttgatatgcaccttttttttgtattaactcgaaccttaataactcacagTATCATACCATGCGGAATGTCCTCTATATGGCCATGACTGAATTCAGAAAG
- - aaaaaaa
- - - - - - - - - - - - tgctgac
- - - - - - - - - - - - - - - - - - - - - - gtgtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - -gatatgc