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gttttacaatatctcatctaccggttcctttacctttcctcctataagagggatctcttttcatggctataaaatatcttacacttgagacctaaaggatttgattgaactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGATGAGAGACGTAGGCTTAGTATGGCTTATGATGTG
species | Glycine max |
transcript | GLYMA03G34890.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAG GGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGAEST: gi|193419164|gb|FK381848.1|FK381848
genomic: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgttttacaat ... aactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGA
EST: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAG GGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGAEST: gi|33387541|gb|CA850748.1|CA850748
genomic: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgttttacaat ... aactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGA
EST: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAG GGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGAEST: gi|193424026|gb|FK386781.1|FK386781
genomic: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgttttacaat ... aactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGA
EST: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAG GGGTAGCTTGTATAGGCTGTTGCATAAAACCTGGTGCCACAGAGATGTTGGEST: gi|208154550|gb|GD956695.1|GD956695
genomic: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgttttacaat ... aactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAA-CCTGGTGCCACAGAGATGTTGG
EST: GCAGTCACTAAGCCTCCTAATTTATCAATTGTCACGGAATATTTGTCAAG GGGTAGCTTGTACAGGCTGTTGCATAAACCTGGEST: gi|193517192|gb|FK473432.1|FK473432
genomic: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgttttacaat ... aactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAACCTGG
EST: TCACGGAATATTTGTCAAG GGGTAGCTTGTACAGGCTGTTGCATAAACCTGGCGCTACAGAGATGTTGGAEST: gi|207795547|gb|GD766852.1|GD766852
genomic: TCACAGAATATTTGTCAAGgttttacaat ... aactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGA
EST: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAG GGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGAEST: gi|193413912|gb|FK380079.1|FK380079
genomic: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgttttacaat ... aactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGA
EST: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAG GGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGAEST: gi|208086610|gb|GD884194.1|GD884194
genomic: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgttttacaat ... aactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGA
EST: GCAGTCACTAAGCCTCCTAATTTATCAATTGTCACGGAATATTTGTCAAG GGGTAGCTTGTACAGGCTGTTGCATAAACCTGGEST: gi|208213300|gb|GE012737.1|GE012737
genomic: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgttttacaat ... aactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAACCTGG
EST: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAG GGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGAEST: gi|254324292|gb|GR840609.1|GR840609
genomic: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgttttacaat ... aactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGA
EST: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAG GGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGA
genomic: GCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGgttttacaat ... aactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGA
atggctataaaatatcttacacttgagacctaaaggatttgattgaactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGATGAGAGACGTAGGCTTAGTATGGCTTATGATGTG
tataaaatatcttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttacaatatctcatctaccggttcctttacctttcctcctataagagggatctcttttcatggctataaaatatcttacacttgagacctaaaggatttgattgaactgtgcagGGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGATGAGAGACGTAGGCTTAGTATGGCTTATGATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG