1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtataatttttttttcattatttttgttccttttcttaaagcatacttgaatattttacaagtcttctgatatggtattctcctctagGGTTTTTAAACGTGCAGCCCGATTAAATGCTGAGCGGCTTGTGTTAGTGGGGAATTCTGAATGGCAAAGGGGTGTGGTTGGTGTCAAAATTCTCTCTACT
species | Glycine max |
transcript | GLYMA03G34050.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGCAGATTGTTGAGTTGGTTTTGGAAAGCAAACCACTTAAATG GGTTTTTAAACGTGCAGCCCGATTAAATGCTGAGCGGCTTGTGTTAGTGGGEST: gi|10233308|gb|BE802196.1|BE802196
genomic: GGCAGATTGTTGAGTTGGTTTTGGAAAGCAAACCACTTAAATGgtataatttt ... tctcctctagGGTTTTTAAACGTGCAGCCCGATTAAATGCTGAGCGGCTTGTGTTAGTGGG
EST: GAAAAAGGGCAGATTGTTGAGTTGGTTTTGGAAAGCAAACCACTTAAATG GGTTTTTAAACGTGCAGCCCGATTAAATGCTGAGCGGCTTGTGTTAGTGGGEST: gi|15662534|gb|BI699905.1|BI699905
genomic: GAAAAAGGGCAGATTGTTGAGTTGGTTTTGGAAAGCAAACCACTTAAATGgtataatttt ... tctcctctagGGTTTTTAAACGTGCAGCCCGATTAAATGCTGAGCGGCTTGTGTTAGTGGG
EST: GAAAAAGGGCAGATTGTTGAGTTGGTTTTGGAAAGCAAACCACTTAAATG GGTTTTTAAACGTGCAGCCCGATTAAATGCTGAGCGGCTTGTGTTAGTGGGEST: gi|14991238|gb|BI316911.1|BI316911
genomic: GAAAAAGGGCAGATTGTTGAGTTGGTTTTGGAAAGCAAACCACTTAAATGgtataatttt ... tctcctctagGGTTTTTAAACGTGCAGCCCGATTAAATGCTGAGCGGCTTGTGTTAGTGGG
EST: GAAAAAGGGCAGATTGTTGAGTTGGTTTTGGAAAGCAAACCACTTAAATG GGTTTTTAAACGTGCAGCCCGATTAAATGCTGAGCGGCTTGTGTTAGTGGG
genomic: GAAAAAGGGCAGATTGTTGAGTTGGTTTTGGAAAGCAAACCACTTAAATGgtataatttt ... tctcctctagGGTTTTTAAACGTGCAGCCCGATTAAATGCTGAGCGGCTTGTGTTAGTGGG
tcttaaagcatacttgaatattttacaagtcttctgatatggtattctcctctagGGTTTTTAAACGTGCAGCCCGATTAAATGCTGAGCGGCTTGTGTTAGTGGGGAATTCTGAATGGCAAAGGGGTGTGGTTGGTGTCAAAATTCTCTCTACT
ttctgat putative branch site (score: 3)
tattctcctct putative PPT
atacttgaatatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataatttttttttcattatttttgttccttttcttaaagcatacttgaatattttacaagtcttctgatatggtattctcctctagGGTTTTTAAACGTGCAGCCCGATTAAATGCTGAGCGGCTTGTGTTAGTGGGGAATTCTGAATGGCAAAGGGGTGTGGTTGGTGTCAAAATTCTCTCTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG