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...taactcatgttgcaacttttaggggccaagttttattaaattggtcaaatataatttgaaatggccttctcttagaggattgaattgctgtttgatatagTTCTCGCCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGTCATGGTTCTCTTCTTAAAAGTATTGTTATCGATGGAGAAACAACATTGCCTATAT
species | Glycine max |
transcript | GLYMA03G32620.4 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAG TTCTCGCCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGTCATGGTEST: gi|11412282|gb|BF424293.1|BF424293
genomic: CTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGgtcagttaat ... tttgatatagTTCTCGCCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGTCATGGT
EST: TGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAG TTCTCGCCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGGEST: gi|10708953|gb|BF008738.1|BF008738
genomic: TGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGgtcagttaat ... tttgatatagTTCTCGCCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGTCATGGT
EST: TGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAG TTCTCGCCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGTEST: gi|9565407|gb|BE474916.1|BE474916
genomic: TGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGgtcagttaat ... tttgatatagTTCTCGCCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGTCATGGT
EST: TGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAG TTCTCGCCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGTCATGGTEST: gi|7588238|gb|AW704038.1|AW704038
genomic: TGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGgtcagttaat ... tttgatatagTTCTCGCCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGTCATGGT
EST: TGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAG TTCTCGCCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGT
genomic: TGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGgtcagttaat ... tttgatatagTTCTCGCCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGTCATGGT
caaatataatttgaaatggccttctcttagaggattgaattgctgtttgatatagTTCTCGCCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGTCATGGTTCTCTTCTTAAAAGTATTGTTATCGATGGAGAAACAACATTGCCTATAT
gtttgat putative branch site (score: 5)
ataatttgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taactcatgttgcaacttttaggggccaagttttattaaattggtcaaatataatttgaaatggccttctcttagaggattgaattgctgtttgatatagTTCTCGCCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGTCATGGTTCTCTTCTTAAAAGTATTGTTATCGATGGAGAAACAACATTGCCTATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA